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Alternaria redefined - CBS - KNAW

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Woudenberg et al.<br />

Hoog GS de, Horré R (2002). Molecular taxonomy of the <strong>Alternaria</strong> and Ulocladium<br />

species from humans and their identification in the routine laboratory. Mycoses<br />

45: 259–276.<br />

Huelsenbeck JP, Ronquist F (2001). MRBAYES: Bayesian inference of phylogenetic<br />

trees. Bioinformatics 17: 754–755.<br />

Inderbitzin P, Shoemaker RA, O’Neill NR, Turgeon BG, Berbee ML (2006).<br />

Systematics and mating systems of two fungal pathogens of opium poppy: the<br />

heterothallic Crivellia papaveracea with a Brachycladium penicillatum asexual<br />

state and a homothallic species with a Brachycladium papaveris asexual state.<br />

Canadian Journal of Botany 84: 1304–1326.<br />

James LF, Panter KE (1989). Locoweed poisoning in livestock. In: Swaisonine and<br />

related Glycosidase inhibitors (James LF, Elbein AD, Molyneux RJ, Warren CD,<br />

eds). Iowa State University Press, Ames, Iowa, USA: 23–38.<br />

Joly P (1964). Le genre <strong>Alternaria</strong>. Encyclopédie mycologique XXXIII, P. Lechevalier,<br />

Paris, France.<br />

Jones EBG, Klaysuban A, Pang K-L (2008). Ribosomal DNA phylogeny of marine<br />

anamorphic fungi: Cumulospora varia, Dendryphiella species and Orbimyces<br />

spectabilis. The Raffles Bulletin of Zoology Supplement 19: 11–18.<br />

Keissler K von (1912). Zur kenntnis der pilzflora krains. Beihefte zum Botanischen<br />

Zentralblatt 29: 395–440.<br />

Lawrence DP, Park MS, Pryor BM (2012). Nimbya and Embellisia revisited, with<br />

nov. comb for <strong>Alternaria</strong> celosiae and A. perpunctulata. Mycological Progress<br />

11: 799–815.<br />

Lawrence DP, Gannibal PB, Peever TL, Pryor BM (2013). The sections of <strong>Alternaria</strong>:<br />

Formalizing species-groups concepts. Mycologia 105: 530–546.<br />

Liu YJ, Whelen S, Hall BD (1999). Phylogenetic relationships among ascomycetes:<br />

evidence from an RNA polymerse II subunit. Molecular Biology and Evolution<br />

16: 1799–1808.<br />

Matsushima T (1996). Matsushima Mycological Memoirs No. 9. Matsushima Fungus<br />

Collection, Kobe (published by the author).<br />

Minnis AM, Kennedy AH, Grenier DB, Rehner SA, Bischoff JF (2011). Asperisporium<br />

and Pantospora (Mycosphaerellaceae): epitypifications and phylogenetic<br />

placement. Persoonia 27: 1–8.<br />

Nees von Esenbeck CG (1816). Das system der pilze und schwämme. Wurzburg,<br />

Germany.<br />

Nirenberg HI (1976). Untersuchungen über die morphologische und biologische<br />

Differenzierung in der Fusarium-Section Liseola. Mitteilungen aus der<br />

Biologischen Bundesanstalt für Land- und Forstwirtschaft Berlin-Dahlem 169:<br />

1–117.<br />

Norvell LL (2011). Fungal nomenclature. 1. Melbourne approves a new code.<br />

Mycotaxon 116: 481–490.<br />

O’Donnell K, Kistler HC, Cigelnik E, Ploetz RC (1998). Multiple evolutionary origins<br />

of the fungus causing Panama disease of banana: Concordant evidence from<br />

nuclear and mitochondrial gene genealogies. Proceedings of the National<br />

Academy of Sciences of the United States of America 95: 2044–2049.<br />

Page RDM (1996). TreeView: an application to display phylogenetic trees on<br />

personal computers. Computer Applications in the Biosciences 12: 357–358.<br />

Preuss CGT (1851). Übersicht untersuchter pilze, besonders aus der Umgegend<br />

von Hoyerswerda. Linnaea 24: 99–153.<br />

Pryor BM, Gilbertson RL (2000). Molecular phylogenetic relationships amongst<br />

<strong>Alternaria</strong> species and related fungi based upon analysis of nuclear ITS and mt<br />

SSU rDNA sequences. Mycological Research 104: 1312–1321.<br />

Pryor BM, Bigelow DM (2003). Molecular characterization of Embellisia and Nimbya<br />

species and their relationship to <strong>Alternaria</strong>, Ulocladium and Stemphylium.<br />

Mycologia 95: 1141–1154.<br />

Pryor BM, Creamer R, Shoemaker RA, McLain-Romero J, Hambleton S (2009).<br />

Undifilum, a new genus for endophytic Embellisia oxytropis and parasitic<br />

Helminthosporium bornmuelleri on legumes. Botany 87: 178–194.<br />

Rayner RW (1970). A Mycological Colour Chart. Commonwealth Mycological<br />

Institute, Kew, UK.<br />

Ronquist F, Huelsenbeck JP (2003). MrBayes 3: Bayesian phylogenetic inference<br />

under mixed models. Bioinformatics 19: 1572–1574.<br />

Runa F, Park M, Pryor B (2009). Ulocladium systematics revisited: phylogeny and<br />

taxonomic status. Mycological Progress 8: 35–47.<br />

Saccardo PA (1886). Sylloge Fungorum Omnium hucusque cognitorum, Volume 4.<br />

Padua, Italy.<br />

Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, et al. (2009). A<br />

class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology<br />

64: 1–15.<br />

Seifert K, Morgan-Jones G, Gams W, Kendrick B (2011). The genera of<br />

Hyphomycetes. <strong>CBS</strong> Biodiversity Series 9. <strong>CBS</strong> Fungal Biodiversity Centre,<br />

Utrecht, The Netherlands.<br />

Shoemaker RA, Babcock CE (1992). Applanodictyosporous Pleosporales:<br />

Clathrospora, Comoclathris, Graphyllium, Macrospora, and Platysporoides.<br />

Canadian Journal of Botany 70: 1617–1658.<br />

Simmons EG (1952). Culture studies in the genera Pleospora, Clathrospora, and<br />

Leptosphaeria. Mycologia 44: 330–365.<br />

Simmons EG (1967). Typification of <strong>Alternaria</strong>, Stemphylium, and Ulocladium.<br />

Mycologia 59: 67–92.<br />

Simmons EG (1971). Helminthosporium allii as type of a new genus. Mycologia<br />

63: 380–386.<br />

Simmons EG (1983). An aggregation of Embellisia species. Mycotaxon 17: 216–<br />

241.<br />

Simmons EG (1986). <strong>Alternaria</strong> themes and variations (22–26). Pleospora/<br />

Stemphylium and Lewia / <strong>Alternaria</strong>. Mycotaxon 25: 287–308.<br />

Simmons EG (1989). Macrospora Fuckel (Pleosporales) and related anamorphs.<br />

Sydowia 41: 314–329.<br />

Simmons EG (1990). Embellisia and related teleomorphs. Mycotaxon 38: 251–265.<br />

Simmons EG (2002). <strong>Alternaria</strong> themes and variations (287–304). Species on<br />

Caryophyllaceae. Mycotaxon 82: 1–40.<br />

Simmons EG (2007). <strong>Alternaria</strong>. An identification manual. <strong>CBS</strong> Biodiversity Series 6.<br />

<strong>CBS</strong> Fungal Biodiversity Centre, Utrecht, The Netherlands.<br />

Stamatakis A, Alachiotis N (2010). Time and memory efficient likelihood-based tree<br />

searches on phylogenomic alignments with missing data. Bioinformatics 26:<br />

i132–i139.<br />

Sterflinger K, Hoog GS de, Haase G (1999). Phylogeny and ecology of meristematic<br />

ascomycetes. Studies in Mycology 43: 5–22.<br />

Sung G-H, Sung J-M, Hywel-Jones NL, Spatafora JW (2007). A multi-gene<br />

phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized<br />

incongruence using a combinational bootstrap approach. Molecular<br />

Phylogenetics and Evolution 44: 1204–1223.<br />

Svobodová Y (1966). Chmelia slovaca gen. nov., a dematiaceous fungus,<br />

pathogenic for man and animals. Biológia, Bratislava 21: 81–88.<br />

Togashi K (1926). On a new species of <strong>Alternaria</strong> causing a leafspot disease of<br />

Gomphrena globosa L. Bulletin of Imperial College of Agriculture and Forestry<br />

(Morioka) 9: 1–16.<br />

Toth B, Csosz M, Szabo-Hever A, Simmons EG, Samson RA, Varga J (2011).<br />

<strong>Alternaria</strong> hungarica sp. nov., a minor foliar pathogen of wheat in Hungary.<br />

Mycologia 103: 94–100.<br />

Vilgalys R, Hester M (1990). Rapid genetic identification and mapping of<br />

enzymatically amplified ribosomal DNA from several Cryptococcus species.<br />

Journal of Bacteriology 172: 4238–4246.<br />

Xue F, Zhang XG (2007). Ulocladium capsicuma, a new species identified by<br />

morphological and molecular phylogenetic data. Sydowia 59: 161–178.<br />

Wallroth CFW (1833). Flora Cryptogamica Germaniae Sectio 2. J.L. Schrag,<br />

Nürnberg, Germany.<br />

Wang Y, Pei Y-F, O’Neill NR, Zhang X-G (2010). Ulocladium cantlous sp. nov.<br />

isolated from northwestern China: its morphology and molecular phylogenetic<br />

position. Mycologia 102: 374–383.<br />

Wang Y, Geng Y, Ma J, Wang Q, Zhang X-G (2011). Sinomyces: a new genus of<br />

anamorphic Pleosporaceae. Fungal Biology 115: 188–195.<br />

White TJ, Bruns T, Lee S, Taylor J (1990). Amplification and direct sequencing of<br />

fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to<br />

methods and applications (Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds).<br />

Academic Press, San Diego, California, USA: 315–322.<br />

Wiltshire SP (1933). The foundation species of <strong>Alternaria</strong> and Macrosporium.<br />

Transactions of the British Mycological Society 18: 135–160.<br />

Wiltshire SP (1938). The original and modern conceptions of Stemphylium.<br />

Transactions of the British Mycological Society 21: 211–239.<br />

Zhang Y, Schoch CL, Fournier J, Crous PW, Gruyter J de, et al. (2009). Multi-locus<br />

phylogeny of Pleosporales: a taxonomic, ecological and evolutionary reevaluation.<br />

Studies in Mycology 64: 85–102.<br />

Zhang YM, Koko TW, Hyde KD (2011). Towards a monograph of Dothideomycetes:<br />

Studies on Diademaceae. Cryptogamie, Mycologie 32: 115–126.<br />

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