Ensembl Compara - CNB - Protein Design Group

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Compara dataRaw genomic sequenceWhole genome alignments(tBLAT, BlastZnet, PECAN)Syntenic regions (based on BlastZnet)Protein sequence Raw protein alignments (wublastp) Protein Family clusters Protein trees (since Jun 2006 v39) Gene orthology / paralogy predictionsJul 2007
Genomic AlignmentsBlastZNetused to compare closely related pair of speciesBlastZraw > BlastZchain > BlastZnetJul 2007Translated BLAT used to compare more distant pair of speciesPecanmultiple global alignments all vs all coding exons wublastp > Mercator >Pecan on each syntenic block
Page 5 and 6: Timeline 2 : Genomes9/01 Release wi
Page 7 and 8: Ensembl groupsJul 2007GeneBuilders:
Page 9 and 10: BilateriaNCBI Taxonomy for the 31sp
Page 11: Ensembl ComparaA single database wh
Page 15 and 16: Pecana consistency based multiple
Page 17 and 18: Encode ComparisonSPECIFICITYCOVERAG
Page 19 and 20: How to align suchlarge segments?New
Page 21 and 22: EnredoSolving the graphJul 2007Comm
Page 23 and 24: ORTHEUSBranch Transducer ModelFour
Page 25 and 26: HomologyBRH/RHS pairs of speci
Page 27 and 28: Load Genes and LongestTranslation f
Page 29 and 30: Protein trees and homologyDuplicati
Page 31 and 32: Gene tree : 1st data assessmentGood
Page 33: Jul 2007

Ensembl Compara - CNB - Protein Design Group

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