Ensembl Compara - CNB - Protein Design Group
Ensembl Compara - CNB - Protein Design Group
Ensembl Compara - CNB - Protein Design Group
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<strong>Ensembl</strong>: What do you get?Jul 2007Genome Annotation– <strong>Protein</strong> coding gene structureConsistent with genome, predicted across all vertebratesManual annotations (human, mouse, zebrafish, MHC)– RNA genes (including miRNA)• Consistent with genome, predicted in across mammalsAdditional identifiers per genesAffymetrix, EntrezGene, Uniprot…• <strong>Compara</strong>tive & Functional GenomicsGenome alignmentsBlastz, Blat, coordinated with UCSC– Homologues between genomes– <strong>Protein</strong> treesVariants (SNPs), strains, genotypesTiling array data• Infrastructure– Website, Data mining tool, database and data dump– Portable, extendable, open source system with database, API, website,pipeline
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