Ensembl Compara - CNB - Protein Design Group

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*<strong>Ensembl</strong> release cyclegenebuilder (10+3+4)~ 3 monthscore (4)compara (6)functional genomics (5)mart (4)web (7)release!!1 release coordinator+ 1 assistantJul 2007
BilateriaNCBI Taxonomy for the 31species in <strong>Ensembl</strong> 43ChordatesAmniotesTetrapodsMammalsEutherianPrimatesGliresCarnivoraHomo sapiensPan troglodytesMacaca mulattaRattus norvegicusMus musculusCavia porcellusOryctolagus cuniculusTupaia belangeriBos taurusErinaceus europaeusFelis catusCanis familiarisLoxodonta africanaEchinops telfairiDasypus novemcinctusMonodelphis domesticaOrnithorhynchus anatinusGallus gallusXenopus tropicalisDanio rerioTakifugu rubripesTetraodon nigroviridisGasterosteus aculeatusOryzias latipesCiona intestinalisCiona savignyiAedes aegyptiAnopheles gambiaeDrosophila melanogasterCaenorhabditis elegansSaccharomyces cerevisiaeJul 2007
Page 5 and 6: Timeline 2 : Genomes9/01 Release wi
Page 7: Ensembl groupsJul 2007GeneBuilders:
Page 11 and 12: Ensembl ComparaA single database wh
Page 13 and 14: Genomic AlignmentsBlastZNetused t
Page 15 and 16: Pecana consistency based multiple
Page 17 and 18: Encode ComparisonSPECIFICITYCOVERAG
Page 19 and 20: How to align suchlarge segments?New
Page 21 and 22: EnredoSolving the graphJul 2007Comm
Page 23 and 24: ORTHEUSBranch Transducer ModelFour
Page 25 and 26: HomologyBRH/RHS pairs of speci
Page 27 and 28: Load Genes and LongestTranslation f
Page 29 and 30: Protein trees and homologyDuplicati
Page 31 and 32: Gene tree : 1st data assessmentGood
Page 33: Jul 2007

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