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Figure captions<br />

Figure 1 – Properties of independent components (ICs). Column a) shows two ICs representing the<br />

cochlear implant (CI) artifact <strong>for</strong> user #1, implanted on the left side, (blue) and user #2, implanted on<br />

the right side (red). Column b) shows another two ICs representing brain related activity <strong>for</strong> the same<br />

CI users. The top row shows the ICs topographies and the respective residual variance (RV) in % after<br />

dipole fitting. 2-D projections of dipole location and orientation are indicated in black on top of the<br />

topographic maps. The middle row shows the ERP of each IC activation. Zero ms represents auditory<br />

onset and amplitude values are expressed in arbitrary units (a.u.). The bottom row shows the temporal<br />

derivative of the ERP <strong>for</strong> each IC. The time windows corresponding to the onset of the CI artifact are<br />

displayed in light grey, whereas the time window representing activity of interest (N1-P2 peaks) is<br />

displayed in dark grey. For each IC the ratio between the root mean square (RMS) amplitude in the<br />

onset/offset window and the RMS amplitude in the time window of interest was calculated (ratio IC).<br />

Figure 2 – Schematic flow chart of the cochlear implant artifact correction (CIAC) algorithm. The<br />

main inputs are the independent components (ICs) after and corresponding in<strong>for</strong>mation from dipole<br />

fitting, the duration of the auditory stimuli used and a time window of interest that should contain the<br />

auditory evoked responses. In the first step a sub group of ICs is selected based in the residual<br />

variance (RV) obtained after dipole modeling and using a pre-defined threshold (Thr_rv). In the<br />

second step the first temporal derivative of the ICs-ERP is computed and a ratio (ratio deriv.) between<br />

the root mean square (RMS) in the time window of the onset/offset of the artifact (derived from the<br />

duration of the auditory stimuli) and the time window of interest is calculated. The IC with the highest<br />

ratio deriv. is selected as a template and its topography map is correlated with all other ICs maps. In<br />

the third step ICs with a ratio deriv. or a correlation with the template larger than pre-defined<br />

thresholds (Thr_deriv and Thr_corr, respectively), are selected as representing the CI artifact.<br />

Figure 3 – Summary of the auditory evoked potentials (AEPs) <strong>for</strong> the Environmental Sounds Study<br />

(ESS). a) Comparison of single subject AEPs reconstructed after manual (black) and semi-automatic<br />

(red) attenuation of cochlear implant artifacts. A fronto-central channel is shown. b) Grand average<br />

AEPs after manual (black) and semi-automatic (red) CI artifact attenuation and respective N1 and P2<br />

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