presentation, part 1 - Molecular Evolution

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Number of substitutions"80!60!40!20!0!shark"carp"platypus"chicken"cow"0! 100! 200! 300! 400! 500!Time to common ancestor"Adapted from Gillespie (1991)
Raw Genetic Differences"Species 1: AACTAGGTCG!Species 2: AGCTAGGCCG!Uncorrected Distance"2/10 = 0.20!
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How to Study an Island (Madagascar)
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Using Tree Thinking to Reconstructt
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Rush hour traffic in Madagascar
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Imbalance & Endemism in !Madagascar
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Dr. Chris Scotese (Arizona State)Th
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Vicariance?(“paleo-endemics”)Di
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(i.e., the end of the“age of dino
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Montane rainforest!(Annual rainfall
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Page 24: Human Impact:- Humans arrived in Ma
Page 27 and 28: So what are we going to doabout it?
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Page 31 and 32: LEMURS!!LEMURS!!
Page 33 and 34: Photo by David Haring
Page 35 and 36: Photo by Franz Lanting
Page 37 and 38: Photo by me
Page 39 and 40: Photo by David Haring
Page 41 and 42: Ascending Pharyngeal Artery!
Page 43 and 44: Genetic Consensus of Strepsirrhine
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Page 47: Office!Main lab!Thermocycler!Gel el
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Page 53: Extinct &Extant lemursform a cladeA
Page 57 and 58: Single dispersal:lemurs (Yoder et a
Page 59 and 60: “Hard” polytomy versus “Soft
Page 61 and 62: Lineage SortingComplete Lineage Sor
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Page 65 and 66: 22 out of 25 nodeshave bootstrapsup
Page 67 and 68: “Ignoring temporal information ob
Page 69: What is the Molecular Clock Hypothe
Page 73 and 74: The Molecular ClockThe Present0.10s
Page 75 and 76: The Molecular ClockThe Present0.022
Page 77 and 78: T3C2C1T2T1Rate and Time are confoun
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Page 85 and 86: Major Innovation …• Both method
Page 87 and 88: Parameter Estimates by Data Partiti
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Page 93 and 94: N8N9N10C3N1N3N4N5N6N7N11C2N2C8C1C7C
Page 95 and 96: Excellent data quality; very good t
Page 97 and 98: Poor data quality; good taxon sampl
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Page 101 and 102: Lessons learned (a few):• Multipl
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SWEEPSTAKES!
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Reconstructed Indian Ocean currents
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Current Data (presence/absence;mole
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