The qpcR Package - NexTag Supports Open Source Initiatives
The qpcR Package - NexTag Supports Open Source Initiatives
The qpcR Package - NexTag Supports Open Source Initiatives
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26 <strong>qpcR</strong>Details<strong>Package</strong>: <strong>qpcR</strong>Type: <strong>Package</strong>LazyLoad: yesLazyData: yesVersion: 1.0-6Date: 2008-01-28License: GNU GPL (version 2 or any later version)Depends: R (>= 2.0.0), drcURL: http://www.r-project.org; http://www.bioassay.dk; http://www.dr-spiess.de<strong>Package</strong>d: Thu Jan 17 2008; spiessBuilt: R 2.6.0; ; 2008-01-28; windowsIndex:package:<strong>qpcR</strong> Modelling and analysis of real-time PCR data.Functions:confband Confidence bands for a sigmoidal fit.confband <strong>The</strong> amplification efficiency curve of a fitted object.confband Calculation of qPCR efficiency and several other important qPCR parametersconfband Selection of the best model by nested f-tests.confband Plotting PCR data with fitted curves.confband Formatting of PCR data with or without replicates for analysis.confband Residual variance of a sigmoidal fit.confband R-square value of a sigmoidal fit.confband Calculation of PCR efficiency by the window-of-linearity method.confband Calculation of PCR efficiency by fitting of an exponential model and minimconfband Calculation of PCR efficiency by fitting of an exponential model and outliconfband Batch calculation of qPCR efficiency and several other important qPCR paraconfband Root-mean-squared-error of a sigmoidal fit.confband Calculation of qPCR efficiency by dilution curve analysis.confband Value prediction from a fitted sigmoidal model.confband Summarize measures for the goodness-of-fit.confband Comparison of several sigmodal models by RMSE within the exponential regioconfband Simple qPCR data import function (i.e. from text files, clipboard).confband Simple wrapper function for fast model fitting.confband Akaike's second-order Information Criterion for small sample numbers.confband Evidence ratio for model comparison with AIC or AICc.confband Create sigmoidal models from a dataframe and coerce them into a list.confband Optimization of efficiency and F0 estimation by combinatorial cycle eliminDatasets:confband qPCR dilution experiment with replicates (Roche Lightcycler).confband Another qPCR dilution experiment with replicates (Roche Lightcycler).
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