LNCS 2950 - Aspects of Molecular Computing (Frontmatter Pages)

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388 Publications by Thomas J. Head 59. (with N. Jonoska) Images of cellular maps on sofic shifts, Congr. Numer., 101 (1994), 109–115. 60. A metatheorem for deriving fuzzy theorems from crisp versions, Fuzzy Sets and Systems, 73 (1995), 349–358. 61. Cylindrical and eventual languages, Mathematical Linguistics and Related Topics (Gh. Păun, ed.), Ed. Acad. Române, Bucharest, 1995, 179–183. 62. (with A. Weber) Deciding multiset decipherability, IEEE Trans. Inform. Theory, 41 (1995), 291–297. 63. (with A. Weber) The finest homophonic partition and related code concepts, IEEE Trans. Inform. Theory, 42 (1996), 1569–1575. 64. The finest homophonic partition and related code concepts, IEEE Trans. Inform. Theory 42 5 (1996), 1569–1575. 65. (with K. Satoshi, T. Yokomori) Locality, reversibility, and beyond: learning languages from positive data, Proc. Algorithmic Learning Theory (Otzenhausen, 1998), Lecture Notes in Computer Science 1501, Springer–Verlag, 1998, 191–204. 66. Splicing representations of strictly locally testable languages, Discrete Appl. Math., 87 (1998), 139–147. 67. (with G. Rozenberg, R. Bladergroen, C.K.D. Breek, P.H.M. Lomerese, H. Spaink) Computing with DNA by operating on plasmids, BioSystems, 57 (2000), 87–93. 68. Writing by communication by documents in communities of organisms, Millenium III, Issue #4 (winter 1999/2000), 33–42. 69. Circular suggestions for DNA computing, in Pattern Formation in Biology, Vision and Dynamics (A. Carbone, M. Gromov, P. Prusinkiewicz, eds.), World Scientific, Singapore, 2000, 325–335. 70. Relativised code properties and multi–tube DNA dictionaries, in Finite vs. Infinite (C. Calude, Gh. Păun, eds.), Springer–Verlag, 2000, 175–186. 71. (with M. Yamamura, S. Gal) Aqueous computing – mathematical principles of molecular memory and its biomolecular implementation, Chap. 2 in Genetic Algorithms (H. Kitano, ed.), 4 (2000), 49–73 (in Japanese). 72. Writing by methylation proposed for aqueous computing, Chap. 31 in Where Mathematics, Computer Science, Linguistics, and Biology Meet (C. Martin– Vide, V. Mitrana, eds.), Kluwer, Dordrecht, 2001, 353–360. 73. Splicing systems, aqueous computing, and beyond, in Unconventional Models of Computation UMC’2K (I. Antoniou, C.S. Calude, M.J. Dineen, eds.), Springer–Verlag, 2001, 68–84. 74. Biomolecular realizations of a parallel architecture for solving combinatorial problems, New Generation Computing, 19 (2001), 301–312. 75. (with S. Gal) Aqueous computing: Writing into fluid memory, Bull. Europ. Assoc. Theor. Comput. Sci., 75 (2001), 190–198. 76. Visualizing languages using primitive powers, in Words, Semigroups, Transducers (M. Ito, Gh. Păun, S. Yu, eds.), World Scientific, Singapore, 2001, 169–180. 77. Finitely generated languages and positive data, Romanian J. Inform. Sci. & Tech., 5 (2002), 127–136.
Publications by Thomas J. Head 389 78. Aqueous simulations of membrane computations, Romanian J. Inform. Sci. &Tech., 5, 4 (2002), 355–364. 79. An aqueous algorithm for finding the bijections in a binary relation, in Formal and Natural Computing: Essays Dedicated to Grzegorz Rozenberg (W. Brauer, H. Ehrig, J. Karhumaki, A. Salomaa, eds.), Lecture Notes in Computer Science 2300, Springer–Verlag, 2002, 354–360. 80. (with X. Chen, M.J. Nichols, M. Yamamura, S. Gal) Aqueous solutions of algorithmic problems: emphasizing knights on a 3X3, DNA Computing – 7th International Workshop on DNA–Based Computers June 2001 (N. Jonoska, N.C.Seeman, eds.), Lecture Notes in Computer Science 2340, Springer– Verlag, 2002, 191–202. 81. (with X. Chen, M. Yamamura, S. Gal) Aqueous computing: a survey with an invitation to participate, J. Computer Sci. Tech., 17 (2002), 672–681. 82. (with D. Pixton, E. Goode) Splicing systems: regularity and below, DNA Computing – 8th International Workshop on DNA–Based Computers (M. Hagiya, A. Ohuchi, eds.), Lecture Notes in Computer Science 2568, Springer–Verlag, 2003, 262–268.
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Lecture Notes in Computer Science 2
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Nata˘sa Jonoska Gheorghe Păun Grz
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Thomas J. Head
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VIII Preface portant to keep in min
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X Table of Contents Formal Properti
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Solving Graph Problems by P Systems
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where Solving Graph Problems by P S
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Writing Information into DNA Masano
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Writing Information into DNA 25 Ham
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Writing Information into DNA 27 Fig
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Writing Information into DNA 29 Dea
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5 Results 5.1 DNA Code for the Engl
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Writing Information into DNA 33 3.
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Writing Information into DNA 35 101
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Balance Machines: Computing = Balan
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+ .. . + Balance Machines: Computin
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x Balance Machines: Computing = Bal
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1 Balance Machines: Computing = Bal
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Eilenberg P Systems with Symbol-Obj
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2 Definitions Definition 1. A strea
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5 Conclusions Eilenberg P Systems w
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Molecular Tiling and DNA Self-assem
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3 Molecular Self-assembly Processes
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8 Hierarchical Tiling Molecular Til
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References Molecular Tiling and DNA
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On Some Classes of Splicing Languag
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ˆxa ˆby ✬ ✩✬ ✩ a b x y
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The Power of Networks of Watson-Cri
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Fixed Point Approach to Commutation
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Here the last one holds if and only
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� � � � � Fixed Point App
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Remarks on Relativisations and DNA
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Splicing Test Tube Systems and Thei
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Splicing Test Tube Systems 141 the
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Splicing Test Tube Systems 143 to a
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Splicing Test Tube Systems 145 6. R
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Splicing Test Tube Systems 147 (c)
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I0 Ai i Splicing Test Tube Systems
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Splicing Test Tube Systems 151 4. J
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Digital Information Encoding on DNA
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DNA-based Cryptography Ashish Gehan
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DNA-based Cryptography 169 concern.
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DNA-based Cryptography 171 The one-
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DNA-based Cryptography 173 of DNA t
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DNA-based Cryptography 175 Fig. 3.
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DNA-based Cryptography 177 the comp
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DNA-based Cryptography 179 can be c
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DNA-based Cryptography 181 4.4 DNA-
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DNA-based Cryptography 183 Fig. 7.
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DNA-based Cryptography 185 offer li
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DNA-based Cryptography 187 30. C. M
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Splicing to the Limit Elizabeth Goo
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Splicing to the Limit 191 molecular
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Splicing to the Limit 193 Discussio
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Example 9. The splicing rules are S
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−2α � kNNk = −2αMN, k α
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Finally we define the limit languag
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6 Conclusion Splicing to the Limit
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Formal Properties of Gene Assembly
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(a) (b) Formal Properties of Gene A
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n-Insertion on Languages Masami Ito
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n-Insertion on Languages 215 3. ∀
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n-Insertion on Languages 217 Theore
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Transducers with Programmable Input
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1 01 s 0 Transducers with Programma
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order β l Transducers with Program
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start tile Transducers with Program
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Methods for Constructing Coded DNA
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u u Methods for Constructing Coded
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On the Universality of P Systems wi
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An Algorithm for Testing Structure
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Definition 1. Define the relation
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280 Manfred Kudlek Definition 5. Co
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On Languages of Cyclic Words 283 Th
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On Languages of Cyclic Words 285 No
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On Languages of Cyclic Words 287 Th
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A DNA Algorithm for the Hamiltonian
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Formal Languages Arising from Gene
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A Proof of Regularity for Finite Sp
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--- ◦ ❄ ⊗ γ ✲ A Proof of R
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The Duality of Patterning in Molecu
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The Duality of Patterning in Molecu
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Membrane Computing: Some Non-standa
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where: Membrane Computing: Some Non
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where: Membrane Computing: Some Non
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Page 347 and 348: Membrane Computing: Some Non-standa
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LNCS 2950 - Aspects of Molecular Computing (Frontmatter Pages)

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