LNCS 2950 - Aspects of Molecular Computing (Frontmatter Pages)

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Table of Contents Solving Graph Problems by P Systems with Restricted Elementary Active Membranes ................................................ 1 Artiom Alhazov, Carlos Martín-Vide, Linqiang Pan Writing Information into DNA ...................................... 23 Masanori Arita Balance Machines: Computing = Balancing .......................... 36 Joshua J. Arulanandham, Cristian S. Calude, Michael J. Dinneen Eilenberg P Systems with Symbol-Objects ........................... 49 Francesco Bernardini, Marian Gheorghe, Mike Holcombe Molecular Tiling and DNA Self-assembly ............................. 61 Alessandra Carbone, Nadrian C. Seeman On Some Classes of Splicing Languages .............................. 84 Rodica Ceterchi, Carlos Martín-Vide, K.G. Subramanian The Power of Networks of Watson-Crick D0L Systems ................. 106 Erzsébet Csuhaj-Varjú, Arto Salomaa Fixed Point Approach to Commutation of Languages .................. 119 Karel Culik II, Juhani Karhumäki, Petri Salmela Remarks on Relativisations and DNA Encodings ...................... 132 Claudio Ferretti, Giancarlo Mauri Splicing Test Tube Systems and Their Relation to Splicing Membrane Systems ................................................ 139 Franziska Freund, Rudolf Freund, Marion Oswald Digital Information Encoding on DNA ............................... 152 Max H. Garzon, Kiranchand V. Bobba, Bryan P. Hyde DNA-based Cryptography .......................................... 167 Ashish Gehani, Thomas LaBean, John Reif Splicing to the Limit .............................................. 189 Elizabeth Goode, Dennis Pixton
X Table of Contents Formal Properties of Gene Assembly: Equivalence Problem for Overlap Graphs ................................................... 202 Tero Harju, Ion Petre, Grzegorz Rozenberg n-Insertion on Languages .......................................... 213 Masami Ito, Ryo Sugiura Transducers with Programmable Input by DNA Self-assembly .......... 219 Nataˇsa Jonoska, Shiping Liao, Nadrian C. Seeman Methods for Constructing Coded DNA Languages ..................... 241 Nataˇsa Jonoska, Kalpana Mahalingam On the Universality of P Systems with Minimal Symport/Antiport Rules ............................................................ 254 Lila Kari, Carlos Martín-Vide, Andrei Păun An Algorithm for Testing Structure Freeness of Biomolecular Sequences ........................................................ 266 Satoshi Kobayashi, Takashi Yokomori, Yasubumi Sakakibara On Languages of Cyclic Words ..................................... 278 Manfred Kudlek A DNA Algorithm for the Hamiltonian Path Problem Using Microfluidic Systems .............................................. 289 Lucas Ledesma, Juan Pazos, Alfonso Rodríguez-Patón Formal Languages Arising from Gene Repeated Duplication ............ 297 Peter Leupold, Victor Mitrana, José M.Sempere A Proof of Regularity for Finite Splicing ............................. 309 Vincenzo Manca The Duality of Patterning in Molecular Genetics ...................... 318 Solomon Marcus Membrane Computing: Some Non-standard Ideas ..................... 322 Gheorghe Păun The P Versus NP Problem Through Cellular Computing with Membranes ...................................................... 338 Mario J. Pérez-Jiménez, Alvaro Romero-Jiménez, Fernando Sancho-Caparrini Realizing Switching Functions Using Peptide-Antibody Interactions ..... 353 M. Sakthi Balan, Kamala Krithivasan
Page 1 and 2: Lecture Notes in Computer Science 2
Page 3 and 4: Nata˘sa Jonoska Gheorghe Păun Grz
Page 5 and 6: Thomas J. Head
Page 7: VIII Preface portant to keep in min
Page 11 and 12: Solving Graph Problems by P Systems
Page 25 and 26: where Solving Graph Problems by P S
Page 33 and 34: Writing Information into DNA Masano
Page 35 and 36: Writing Information into DNA 25 Ham
Page 37 and 38: Writing Information into DNA 27 Fig
Page 39 and 40: Writing Information into DNA 29 Dea
Page 41 and 42: 5 Results 5.1 DNA Code for the Engl
Page 43 and 44: Writing Information into DNA 33 3.
Page 45 and 46: Writing Information into DNA 35 101
Page 47 and 48: Balance Machines: Computing = Balan
Page 49 and 50: + .. . + Balance Machines: Computin
Page 51 and 52: x Balance Machines: Computing = Bal
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Eilenberg P Systems with Symbol-Obj
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2 Definitions Definition 1. A strea
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5 Conclusions Eilenberg P Systems w
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Molecular Tiling and DNA Self-assem
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3 Molecular Self-assembly Processes
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8 Hierarchical Tiling Molecular Til
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References Molecular Tiling and DNA
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On Some Classes of Splicing Languag
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ˆxa ˆby ✬ ✩✬ ✩ a b x y
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The Power of Networks of Watson-Cri
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Fixed Point Approach to Commutation
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Here the last one holds if and only
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� � � � � Fixed Point App
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Remarks on Relativisations and DNA
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Splicing Test Tube Systems and Thei
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Splicing Test Tube Systems 141 the
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Splicing Test Tube Systems 143 to a
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Splicing Test Tube Systems 145 6. R
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Splicing Test Tube Systems 147 (c)
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I0 Ai i Splicing Test Tube Systems
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Splicing Test Tube Systems 151 4. J
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Digital Information Encoding on DNA
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DNA-based Cryptography Ashish Gehan
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DNA-based Cryptography 169 concern.
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DNA-based Cryptography 171 The one-
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DNA-based Cryptography 173 of DNA t
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DNA-based Cryptography 175 Fig. 3.
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DNA-based Cryptography 177 the comp
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DNA-based Cryptography 179 can be c
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DNA-based Cryptography 181 4.4 DNA-
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DNA-based Cryptography 183 Fig. 7.
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DNA-based Cryptography 185 offer li
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DNA-based Cryptography 187 30. C. M
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Splicing to the Limit Elizabeth Goo
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Splicing to the Limit 191 molecular
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Splicing to the Limit 193 Discussio
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Example 9. The splicing rules are S
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−2α � kNNk = −2αMN, k α
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Finally we define the limit languag
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6 Conclusion Splicing to the Limit
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Formal Properties of Gene Assembly
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(a) (b) Formal Properties of Gene A
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n-Insertion on Languages Masami Ito
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n-Insertion on Languages 215 3. ∀
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n-Insertion on Languages 217 Theore
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Transducers with Programmable Input
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1 01 s 0 Transducers with Programma
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order β l Transducers with Program
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start tile Transducers with Program
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Methods for Constructing Coded DNA
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u u Methods for Constructing Coded
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On the Universality of P Systems wi
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An Algorithm for Testing Structure
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Definition 1. Define the relation
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280 Manfred Kudlek Definition 5. Co
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On Languages of Cyclic Words 283 Th
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On Languages of Cyclic Words 285 No
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On Languages of Cyclic Words 287 Th
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A DNA Algorithm for the Hamiltonian
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Formal Languages Arising from Gene
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A Proof of Regularity for Finite Sp
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--- ◦ ❄ ⊗ γ ✲ A Proof of R
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The Duality of Patterning in Molecu
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The Duality of Patterning in Molecu
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Membrane Computing: Some Non-standa
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where: Membrane Computing: Some Non
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where: Membrane Computing: Some Non
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The P Versus NP Problem Through Cel
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Realizing Switching Functions Using
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Realizing Switching Functions Using
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AND Gate Realizing Switching Functi
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NOR Gate Realizing Switching Functi
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Plasmids to Solve #3SAT Rani Siromo
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Plasmids to Solve #3SAT 363 A comme
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Plasmids to Solve #3SAT 365 from th
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Communicating Distributed H Systems
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Proof Communicating Distributed H S
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Books: Publications by Thomas J. He
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Publications by Thomas J. Head 387
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Publications by Thomas J. Head 389
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LNCS 2950 - Aspects of Molecular Computing (Frontmatter Pages)

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