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INDEX<br />
A<br />
of Agricultural Genome Information Sys-<br />
tem (AGIS), 166f<br />
Abstraction level, in KEGG data, 64, 65f<br />
Accessions, gi’s Vs, 15–16<br />
Ace database (ACEDB) language<br />
of bioWidgets, 257–259<br />
of Human Gene Mutation Database<br />
(HGMD),101<br />
in Agricultural Genome Information Sys- of OPM multidatabase tools, 194f<br />
tem (AGIS), 165, 168–172, 173f ASCII, 213<br />
vs. biowidgets, 257<br />
ASN. I (Abstract Syntax Notation) conver-<br />
Ace database (ACEDB) manager, 265–278 sion, 13-14<br />
availability of, 277<br />
<strong>and</strong> BioKleisli, 205, 207, 208<br />
client server of, 273–274<br />
Asserted-diagrams table, 39<br />
definition language of, 268–269<br />
Assignment, in conceptual translations,<br />
file format of, 270–271 16–17<br />
history of, 265–267<br />
performance of, 276–277<br />
portability of, 275–276<br />
query language of, 272–273<br />
vs. other databases, 271–272<br />
Associations, multi-axial, 109–1 11<br />
Atlas spatial coordinates, in Edinburgh<br />
Mouse Atlas, 132–133<br />
web address of, 277<br />
web interface of, 274–275<br />
B<br />
Administration, of SRS, 228–229<br />
Balancing the model, 42<br />
Agricultural Genome Information System Berkeley Drosophila Genome Project<br />
(AGIS), 163–173 (BDGP), 141–142<br />
architecture of, 166f<br />
browse mode in, 168<br />
Best hit, in metabolic reconstruction, 39<br />
Bidirectional best hit, in metabolic recondatabase<br />
links in, 168f<br />
struction, 39<br />
databases of, 164t–165t Binary relations<br />
future of, 173<br />
implementation of, 165–166<br />
main menu of, 167f<br />
query mode in, 169–171<br />
table maker mode in, 171–173<br />
web address of, 163<br />
Alignment tools, in Biology Workbench,<br />
in KEGG data, 65, 75<br />
object dictionary approach for, 107–108<br />
Bins map strategy, 153<br />
Biocatalysis/biodegradation database, 44<br />
Biochemical pathways, 63–76. See also<br />
Kyoto Encyclopedia of Genes <strong>and</strong><br />
Genomes (KEGG)<br />
243–244 data organization of, 70<br />
Amino acid sequences, in SRS, 221<br />
Bioinformatics<br />
Analysis modules, in Biology Workbench, challenges in, 5-6<br />
237–238<br />
definition of, 2-3<br />
Analysis packages, <strong>and</strong> biomedical data inte- technology development history of, 1–2<br />
gration, 201–210. See also BioKleisli BioKleisli, 201–210<br />
Analysis tools, in Biology Workbench,<br />
biomedical queries in, 207–208<br />
242–243 collection programming language (CPL)<br />
Annotation, in bioWidget displays, 147<br />
in, 205–206<br />
Annotation classes, in FlyBase, 147<br />
Applets, 256<br />
complex type model in, 203–205<br />
<strong>and</strong> CORBA, 210<br />
Application parameters, in SRS, 221, 222f<br />
Application programs, in LIMS, 280–281<br />
Architecture<br />
GBD query in, 208–209<br />
as generic driver, 209–2 10<br />
non-human homolog search in, 208, 209
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