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GenBank database query software of, 28–31<br />
homology information of, 21–22<br />
sequence identifiers in, 15<br />
Gene catalogs, in KEGG, 70<br />
Gene Expression Database (GXD), 124–1 26<br />
Genera software, 177, 182<br />
Genes. See also specific types, e.g., BMP<br />
gene<br />
in biochemical pathways, 63–76 ( See also<br />
Kyoto Encyclopedia of Genes <strong>and</strong><br />
Genomes (KEGG))<br />
symbols for, in HGMD, 101–102<br />
299<br />
<strong>and</strong> databases, other, 32<br />
growth rate of, 28f<br />
limitations of, 32–33<br />
perspectives of, 33<br />
scope <strong>and</strong> content of, 24<br />
sequence selection of, 25–26<br />
sequence type definitions of, 22–24<br />
similarity search of, 25–26<br />
HTML, in Biology Workbench, 235–236<br />
Human bone protein-2B (BMP2B), 23<br />
Human Gene Mutation Database (HGMD),<br />
Genetics, OMIM in, 78 99–103<br />
Genome, annotation of, 259–260<br />
data access in, 102<br />
Genome Database (GDB), 85–97<br />
data coverage <strong>and</strong> structure in, 101<br />
dispersion measurement in, 9 1–93<br />
outlookfor, 103<br />
linear alignment in, 87–90<br />
utility of, 99–100<br />
map display in, 94–95, 96f<br />
web address of, 99<br />
map integration in, 93–94<br />
Hyperlinks. See also Links, database<br />
map query in, 86–87<br />
in FlyBase, 148<br />
nonlinear alignment in, 90, 91f<br />
in SRS, 220<br />
OPM tools for, 196<br />
Hypertext navigation, 58<br />
Genome maps, in KEGG, 70<br />
Hypertext objects, in Agricultural Genome<br />
Genome project, NCBI scale-up efforts for,<br />
18<br />
GenomeNet, 64t, 68t<br />
Information System (AGIS), 173<br />
Genomic-map displays, in EcoCyc, 56–57<br />
Gi’s Vs accessions, 15–16<br />
I<br />
GKB Editor, 50 Icarus, 214–215<br />
Grammars, 2 15 Identifiers<br />
Graphical interface, of HOVERGEN, 28–31 in LabBase, 283<br />
Graphical user interface<br />
in metabolic reconstruction system, 38<br />
of bioWidgets, 255–256<br />
of National Center for Biotechnology In-<br />
of EcoCyc, 48<br />
formation (NCBI), 13<br />
Grasper-CL, 58f, 59<br />
of sequence, 14–16<br />
Implementation issues, in object-protocol<br />
model, 198<br />
H Indexing, in SRS, 214–216<br />
Integrated data, for molecular biology re-<br />
H. influenzae, in EcoCyc data base, 48<br />
search, 11–18<br />
H. pylori, in EcoCyc data base, 48<br />
Integrating database (ID), of NCBI, 16–18<br />
Heterogeneous textual databanks, 192, Interfaces<br />
21 3–230. See also Sequence Retrieval of Biology Workbench, 234<br />
System (SRS) of bioWidgets, 255–256<br />
Hierarchical associations, 112–1 13<br />
Common Lisp Interface Manager (CLIM)<br />
Homologous sequences, of vertebrate genes, as, 58<br />
21–33 CORBA as, 246–247<br />
Homology, definition of, 22–24<br />
of EcoCyc, 48<br />
HOVERGEN, 21–33 of HOVERGEN, 28–31<br />
application examples of, 32<br />
IDL as, 247–249<br />
availability of, 33<br />
Java as, 258<br />
classification of, 26–28<br />
of KEGG, 66–67<br />
data treatment of, 24–25<br />
of LabBase, 284
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