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ICDD PDF-4+ 2012 Instructions

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<strong>ICDD</strong> <strong>PDF</strong>-­‐<strong>4+</strong> and SIeve+ Software<br />

Contents<br />

Setting up your data ................................................................................................................... 3<br />

Setting up Preferences ................................................................................................................ 4<br />

Searching the Database .............................................................................................................. 5<br />

Starting SIeve+ and loading your data ....................................................................................... 7<br />

Multi-phase samples .............................................................................................................. 8<br />

Publishing your final analyses ................................................................................................... 9<br />

Common problems ................................................................................................................... 11<br />

‘I have found a card with peaks in similar positions, but shifted to higher/lower angle’ .... 11<br />

‘The intensities on the <strong>PDF</strong> card are odd – they’re all multiples of 10, or 20!’ .................. 11<br />

Phase analysis in action: Examples .......................................................................................... 12<br />

Example 1: Titanium dioxide ............................................................................................... 12<br />

Example 2: Nb,Cu-doped Titanium dioxide ........................................................................ 15<br />

Example 3: Two-phase mixture of NaCl and Si .................................................................. 18<br />

Example 4: Data Mining ...................................................................................................... 20<br />

Further Reading ....................................................................................................................... 23<br />

References ................................................................................................................................ 23<br />

Appendix 1: Conversion of ‘old’ to ‘new’ format <strong>PDF</strong> Card Numbers .................................. 24<br />

Appendix 2: Quality Marks ..................................................................................................... 25<br />

This software is only licensed for use on one computer. It is<br />

not available for users to install on other computers.


Last updated: NRM, 07/03/2013


Setting up your data<br />

The first thing you need to do is to set up your experimental powder diffraction data for<br />

analysis. In order to load your experimental data in to the SIeve+ software, it must first be<br />

in one of the following data formats:<br />

-­‐ *.csv (as output by the Siemens D500 and Philips PW1825)<br />

-­‐ *.dat (for the Siemens D5000s)<br />

-­‐ *.xyd (for all other instruments)<br />

For data collected on the Siemens D5000s:<br />

1. Open the program ConvX<br />

2. Choose File Type: DiffracPlus Raw<br />

3. Select File(s) to convert (can multi-­‐select files where identical scan parameters used)<br />

4. Set Output file details to ‘Files of Type’ = ASCII 2theta,I<br />

5. Check Output Parameters boxes filled in appropriately<br />

6. Press ‘Do That Convert Thang!!’ button and check for any files skipped.<br />

For data collected on the STOE Image Plate:<br />

1. In WinX POW , go to Raw Data/Raw Data Handling<br />

2. Go to File/Open, and select your file<br />

3. Click Ranges/Add Ranges – add ranges 2 and above to range 1<br />

4. Click Ranges/Extract Ranges – extract range 1, to a file with format .ra1<br />

5. Click File/Export, and select the *.xyd file format option<br />

For data collected on the STOE PSD systems:<br />

1. In WinX POW , go to Raw Data/Raw Data Handling<br />

2. Go to File/Open, and select your file<br />

3. Click File/Export, and select the *.xyd file format option<br />

You can also import data in GSAS format by specifying the start and stop angles, step size,<br />

the number of data points per line, the line number where data start, and the wavelength.


Setting up Preferences<br />

The next step is to ensure that the <strong>PDF</strong>-­‐<strong>4+</strong> <strong>2012</strong> software is set up appropriately for the<br />

experiment that you performed.<br />

1. Click on the ‘<strong>PDF</strong>-­‐<strong>4+</strong> <strong>2012</strong>’ icon on the desktop of the computer to launch the<br />

software, if not already running.<br />

2. At the top of the screen, click the Edit menu, then choose Preferences.<br />

3. In the <strong>PDF</strong> Card tab, ensure that the ‘Wavelength’ matches that of your experiment.<br />

4. Click on the Simulated Profile tab and make sure that again the Type and Anode<br />

match your experiment (i.e. Type = Ka1 or Ka1+2 and Anode = Co, Cu or Mo as<br />

appropriate).<br />

5. Also on the Simulated Profile tab, check how the ‘Profile’ is being calculated for<br />

simulated line shapes. An easy way to simulate sharper Bragg lines is to use a larger<br />

‘Crystallite Size’ with ‘Mean Crystallite Diameter’ of 500.0 nm or higher; conversely,<br />

using a smaller ‘Mean Crystallite Diameter’ will calculate a broader line shape.<br />

6. At the bottom of the Simulated Profile tab, you can also select the Ranges displayed<br />

for simulated profiles.<br />

7. On the SIeve+ tab, set the desired Search Method (typically Hanawalt), Search and<br />

Match Windows (typically 0.18), Lowest Allowable GOM (1000-­‐2000, lower will allow<br />

more ‘false positives’) and Wavelength (as appropriate)<br />

8. Click OK.


Searching the Database<br />

The database can be accessed by clicking on the ‘<strong>PDF</strong>-­‐<strong>4+</strong> 2011’ icon on the desktop of the<br />

computer.<br />

There are a multitude of search criteria – I would encourage you to play around and see<br />

what things do. As a brief summary, you can search by the following general criteria:<br />

• Database (there are actually several included)<br />

• Ambient or non-­‐ambient temperature/pressure<br />

• Quality Mark (S, R, I are more reliable)<br />

• Subclass (e.g. cements, ceramics…)<br />

• Elements (using Boolean logic or Yes/No/Maybe)<br />

• Formula, composition & number of elements<br />

• Name (compound, common, mineral)<br />

• Zeolite or Mineral Classification<br />

• References (author, journal, title, etc.)<br />

• Structures (symmetry, space group, unit cell dimensions, (non)centrosymmetry,<br />

atomic environment (e.g. tetrahedral, etc.))<br />

• Lines at specific low angles (‘long lines’) or intense peaks (‘strong lines’)<br />

• Density<br />

• Melting point<br />

• I/Ic (for RIR method of quantitative phase analysis)<br />

• Organic functional groups…<br />

Those italicised are recommended, but not essential. Those in bold should be considered<br />

essential.


To filter through the database:<br />

1. Go to the main ‘Search’ window<br />

2. Choose your filtering criteria – a good starting point might be to select those<br />

elements present in your sample. To do this:<br />

a. Select either the Boolean or Yes/No/Maybe tab; I prefer the latter, so we’ll<br />

do that here.<br />

b. Click Set Unselected to ‘No’ – this will deselect all elements<br />

c. Click an element to add it to the ‘Maybe’ list (i.e. this element may or may<br />

not be in the phases in your sample). Clicking it again will add it to the ‘Yes’<br />

list (i.e. this element must be in all the phases in the sample). A third click<br />

will return it to the ‘No’ list.<br />

d. Repeat for all elements as appropriate.<br />

3. Repeat for other search criteria if and where appropriate.<br />

4. Once you are happy with the search criteria, click Search at the bottom of the<br />

‘Search’ window. A ‘Results’ list will appear in a new window.<br />

5. Double-­‐clicking on any of the results in the list will open that <strong>PDF</strong> Card up in a new<br />

window.<br />

You can also search for specific <strong>PDF</strong> card numbers:<br />

1. In the main <strong>PDF</strong>-­‐<strong>4+</strong> <strong>2012</strong> menubar, click File and then Open <strong>PDF</strong> Card...<br />

2. Enter the card number...<br />

If you wish to search for a <strong>PDF</strong> card in the old 6 digit XX-­‐XXXX <strong>PDF</strong> card number, you will<br />

need to convert it to the new 9 digit <strong>PDF</strong> card number format – see Appendix 1.


Starting SIeve+ and loading your data<br />

We should now have the software open, and set up to look at the data collected during your<br />

specific diffraction experiment.<br />

1. At the top of the <strong>PDF</strong>-­‐<strong>4+</strong> <strong>2012</strong> screen, click Tools, and then SIeve+<br />

2. In the SIeve+ window, choose File, then Import Diffraction Pattern<br />

3. Select your *.csv, *.dat or *.xyd file. Another window appears!<br />

a. Note: If using a (D5000) *.dat file, there will be a warning that you’re being<br />

kicked in to the Advanced Experimental Data Importer – this is because you<br />

have a comment in Line 1. Under ‘Delimiter’ set the Start Line to 2.<br />

4. Select the appropriate wavelength for your data<br />

5. Click Show Graph. Make it matches what you actually did (correct 2θ range etc.)<br />

6. Click Process Data<br />

7. Another window opens! Here you can remove the background, smooth the data,<br />

and remove Kα2 peaks. So far, I have found using the default options OK, though<br />

those with significant amorphous (e.g. glassy) components may need to be more<br />

careful: press Remove, then Smooth if necessary<br />

8. Kα2 stripping:<br />

a. If your data were collected on the PW1825, D500 or D5000s, zoom in on high<br />

angle lines and check to see if you are resolving the Kα2 peaks. If so, press<br />

Strip Kα2, but be careful of introducing artefacts in to your data.<br />

b. If the data were collected on the STOEs, instead press Skip><br />

9. You should notice that the Plot Preview in the Import screen has updated with tick<br />

marks indicating your peak positions. SIeve+ will use these tick marks to try to<br />

identify what phase(s) are present in your sample. If you’re happy with the tick<br />

marks chosen, press Accept Peaks. If not, repeat the process or use the Manual<br />

Peak Selection controls to add or remove peaks. This is the key stage so it is vital you<br />

do this well.<br />

10. Click Import


11. Click on the appropriate Past Search Filter to select a relevant subsection of the<br />

data.<br />

12. Click Apply Filter and wait while the software searches for matches. Clicking ‘No<br />

Filter’ to search against the full database.<br />

A list of results appears, ranking the database entries in the order in which they most closely<br />

resemble your data by some ‘Goodness of Match’ score. This does NOT mean that the top<br />

result is definitely a match for your sample – just that its XRD pattern most closely matches<br />

your experimental data. It is much more important that the chemistry matches what is<br />

reasonable or expected for your sample!<br />

Double-­‐clicking any entry in the list will display the <strong>PDF</strong> database card for that entry.<br />

To reiterate: you will now have a list of possible matches to your sample, organised by the<br />

‘Goodness of Match’ score – bear in mind that the software only knows what you tell it<br />

about your specimen, and so the top answer is NOT necessarily correct – garbage in,<br />

garbage out!<br />

You can also add a specific <strong>PDF</strong> card number to the list in SIeve+ if you wish to compare<br />

against something specific:<br />

1. In the SIeve+ window, click on the Matches menu<br />

2. Click Add <strong>PDF</strong> ...<br />

Multi-­‐phase samples<br />

Follow all the instructions in the previous sections!<br />

If you have a multi-­‐phase sample, you can then click on the ‘handshake’ button at the top of<br />

the SIeve+ window to accept a card that you think is a good match for one of the phases in


your sample. The software will then look for the next best matching phase (assuming you<br />

have made your filter criteria quite general).<br />

Once all the peaks in the diffraction pattern have been accounted for, the software may be<br />

able to use the RIR method to give an estimated of the quantity of phases present –<br />

providing the cards you have selected all have an I/Ic value entered – many do not.<br />

I/Ic is the height of the strongest reflection in the pattern (the 100% reflection) expressed as<br />

a ratio to that of corundum, a-­‐Al2O3. I/Ic is obtained by preparing a 50:50 mixture (by<br />

WEIGHT) of the phase with corundum and measuring the strongest reflection from the<br />

phase and from corundum as obtained from the mixture.<br />

The RIR method is relatively easy, but can be very inaccurate. There is a tutorial about it on<br />

the <strong>ICDD</strong> website here which those considering it should probably read. You definitely need<br />

randomly orientated powder samples, and it only gives ratios not absolute amounts. If you<br />

want a more accurate quantification, you really need to use the Rietveld method.<br />

Publishing your final analyses<br />

Once you’ve satisfactorily finished your phase analysis, you should have a fitted graph that<br />

you want to export in to some format that you can take elsewhere and view as a picture or<br />

paste in to a report, etc.<br />

The best way I have found to do this within the software is...<br />

1. In the SIeve+ window, go to the Phases menu and Open Simulated Profile with<br />

Experimental Data<br />

2. In the window that appears, click Edit and then Preferences<br />

3. In the <strong>PDF</strong> Card tab, ensure that the ‘Wavelength’ matches that of your experiment.<br />

Click on the Simulated Profile tab and make sure that again the Type and Anode


match your experiment (i.e. Type = Ka1 or Ka1+2 and Anode = Co, Cu or Mo as<br />

appropriate).<br />

4. If you wish to export the selected <strong>PDF</strong> card(s) as simulated profile(s), the easiest and<br />

quickest way to broaden the simulated profile peaks to more closely match yours is<br />

to click on the Simulated Profile tab and change the ‘Profile’ setting from Pseudo-­‐<br />

Voigt to Crystallite Size and change the Mean Crystallite Diameter from e.g. 25 to<br />

250 – play around and see. This does not imply anything about the crystallite size in<br />

your specimen! Click OK.<br />

5. If you wish instead to export the selected <strong>PDF</strong> card(s) as stick traces (i.e. peaks with<br />

no width), click Plots and Add Stick Trace. Enter the correct <strong>PDF</strong> Card number, and<br />

click Open. Click OK to accept the default ‘Fixed Slit Intensity’ type. Finally, click<br />

Plots, Delete, and select the entry for the full simulate profile – this will be the one<br />

with the full stoichiometry, <strong>PDF</strong> card number AND comments about Experimental<br />

Intensity). Click OK and then Delete.<br />

6. Repeat if and as appropriate for other <strong>PDF</strong> card(s).<br />

7. Once you are satisfied, click File, Save. Change ‘Files of Type:’ to JPEG and give a file<br />

name. This JPEG will be an image file that you can then view or import in to Word,<br />

Powerpoint etc. as a picture file.


Common problems<br />

‘I have found a card with peaks in similar positions, but shifted to<br />

higher/lower angle’<br />

This can have three possible causes:<br />

1. Sample height displacement – even a small error in the height of the sample will<br />

have an impact on peak position. This error may appear fairly linear with diffracted<br />

angle. This is a very common, but largely avoidable, problem. Run the sample again,<br />

with more attention to correct sample height.<br />

2. Wrong wavelength selected – either when importing the data (copper is the default),<br />

or in Search/Match (other people may have changed this). If the peak shift is<br />

dramatically different, this may be the cause.<br />

3. Change in chemistry – if you can replace an element in the crystal structure with<br />

another, this is likely to cause changes in the shape and size of the unit cell. You may<br />

get the same pattern of peaks, but shifted to higher or lower angles. In this case, the<br />

shift is likely to be small at low angles, and significantly larger at higher angles.<br />

‘The intensities on the <strong>PDF</strong> card are odd – they’re all multiples of 10, or 20!’<br />

This would indeed be quite odd for a real sample! Most likely the data have been collected<br />

using an old photographic film technique; check the card text entry for the method used –<br />

perhaps it says a Guinier diffractometer was used, or that intensities were obtained via<br />

‘visual’ or ‘densitometer’ methods. Such techniques are extremely accurate; however, the<br />

ability of the researcher to accurately interpret the data is more limited! Use such cards<br />

with caution.


Phase analysis in action: Examples<br />

Example 1: Titanium dioxide<br />

It can often be a good idea to perform XRD on your reagents before you begin your sample<br />

preparation work; any problems can be spotted before they ruin hours of good work! Here,<br />

I was checking that my reagent, TiO2, was what it said on the bottle -­‐ and in the crucible<br />

after it had been dried at 900 °C! There are two known polymorphs of TiO2: anatase and<br />

rutile. The data were collected on the STOE Imaging Plate detector, with a total scan time of<br />

around 38 minutes.<br />

Phase analysis was then conducted using the SIeve+ software. I clicked on the periodic table<br />

tab and selected both Ti and O, omitting all other elements. This simple search returns 462<br />

cards including many such as TiO, Ti2O3 etc. Scanning through the list for mineral names<br />

highlighted quite a few anatase and rutile phases – in this first plot, from WinX POW , I<br />

compare my experimental data (in green) with <strong>PDF</strong> card number [21-­‐1272], a *-­‐quality<br />

entry, for anatase:


It can immediately be seen that the sample does not contain anatase – none of the most<br />

intense Bragg reflections for anatase, e.g. the (101) peak at 25.281 °2θ, are observed in the<br />

experimental dataset. If we compare instead with rutile (graphics from WinX POW ):<br />

All of the Bragg reflections, including all those of low intensity, for rutile are observed in our<br />

dataset; there are no additional reflections. We can be confident that this sample is the<br />

rutile phase of TiO2.<br />

What was apparent, however, was a small linear peak shift across the diffraction pattern –<br />

the experimental reflections were always at a slightly higher angle than those from the <strong>PDF</strong><br />

card. This is likely caused by a small misalignment of the diffractometer. Had the data been<br />

collected on a Bragg-­‐Brentano geometry instrument, this peak shift would more likely have<br />

arisen from a specimen height displacement error. Remember: all experiments have errors!<br />

Finally, had the peak shift been non-­‐linear, i.e. a small shift at low angles and larger at<br />

higher angles, it most likely would have been a sample effect – some change in the<br />

chemistry of the sample causing a change in the unit cell dimensions.<br />

Of course, SIeve+ can automate this process to some degree. In the Search window, I set up<br />

search filter: ‘Yes’ for Ti,O and ‘No’ to all other elements. I also selected to omit deleted


patterns, which reduced the number of cards returned to 431. Opening SIeve+, I imported<br />

and digitised my experimental diffraction data and automatically applied my filter.<br />

The top card, with a GOM score of 3259, was card 04-­‐014-­‐0245 – no mineral name was<br />

listed for this entry, but the crystal system was ‘Tetragonal’, and the space group P42/mnm.<br />

Comparing with other cards that also gave a good match proved that this card, and my<br />

specimen, were indeed rutile-­‐structured:


Example 2: Nb,Cu-­‐doped Titanium dioxide<br />

In the same research project, I used this TiO2 as a reagent, along with CuO and Nb2O5, to<br />

investigate the possible formation of a rutile-­‐structured solid solution series, Ti1-­‐3xCuxNb2xO2.<br />

Appropriate amounts of each reagent were mixed in an agate mortar and pestle, then fired<br />

in Pt foil boats at 935 ºC for 60h with intermittent regrinding. I then used the imaging plate<br />

detector on our Cu-­‐STOE system for phase analysis.<br />

Compositions (data shown below, in WinX POW ) with x = 0.01–0.23 yielded phase-­‐pure<br />

samples, which were indexed using the rutile space group, P42/mnm, showing that co-­‐<br />

doping of TiO2 with Cu and Nb was possible:<br />

Comparison against the previous example will show that the first five reflections for the<br />

rutile are present and correct here for samples with x = 0.05, 0.13 and 0.20. No other<br />

additional reflections are observed; these samples are phase pure. Note how the rutile<br />

peaks are shifting to lower angles, i.e. higher d-­‐spacings, as x increases. As I replace Ti <strong>4+</strong><br />

with the larger Cu 2+ and Nb 5+ cations in my structure, the unit cell size is increasing. For a<br />

solid solution, generally, unit cell parameters should change linearly with composition – a<br />

phenomenon known as Vegard’s Law. In this case, the a and c cell parameters deviate away<br />

from linearity, but the cell volume does increase linearly with composition (see N. Reeves-­‐<br />

McLaren et al, “Synthesis, structure and electrical properties of Cu3.21Ti1.16Nb2.63O12 and the


CuOx–TiO2–Nb2O5 pseudoternary phase diagram”, Journal of Solid State Chemistry, 2011 for<br />

further details of this study).<br />

The rutile peaks are also present in the other two histograms, for x = 0.242 and 0.286;<br />

however, they are no longer shifting with composition. In addition, we also see extra<br />

reflections – most notably at around 24 and 30 º2θ. In combination, these data show that<br />

the limit for solid solution formation (in samples prepared at 935 ºC as these were, at least)<br />

lies between x = 0.20 and x = 0.242; in this example, I will work on the data for x = 0.286, to<br />

make the presence of the secondary phases obvious.<br />

The indexing of these Bragg reflections from secondary phases was initially informed by the<br />

pseudoternary phase diagram, on which I was working. Previously reported phases with<br />

compositions closest to those of my two rogue samples were obvious candidates to check<br />

first – there were a number of copper niobate and titanium niobate phases listed in the<br />

Powder Diffraction File.<br />

Loading my data file in to SIeve+, I based my initial search filter on what I suspected from<br />

where the composition lay in the pseudoternary phase diagram; I was expecting to see<br />

phases that definitely contained Cu, Nb and O, and might also contain Ti. This returned 24<br />

cards. The software immediately identified a monoclinic CuNb2O6 phase, which gave a good<br />

match for many of my observed reflections. After accepting this card (04-­‐014-­‐9621), the<br />

software pulled up a second, orthorhombic polymorph of CuNb2O6 – this was anticipated,<br />

from literature reviews, as these two phases always co-­‐exist. I accepted this card by again<br />

clicking the handshake button.<br />

No further results were returned. However, there were still additional unindexed<br />

reflections in my data. From my other studies, I knew from the pattern that this was my<br />

doped rutile phase – only one such phase was listed in the database, ‘Cu0.5Ti0.5NbO4’ (x =<br />

0.20) in <strong>PDF</strong> card number 00-­‐046-­‐0524. In the SIeve+ window, I went into the ‘Matches’<br />

menu, and chose ‘Add <strong>PDF</strong> #...’, and entered this card manually. The peaks appeared, and<br />

are a little way off mine – this is to be expected, since the rutile phase in my specimen has a


slightly different composition (which we could calculate from its lattice parameters, if we<br />

wanted to).<br />

I was then satisfied that my sample contained a rutile phase, whose composition could be<br />

calculated from its lattice parameters, and both the orthorhombic and monoclinic forms of<br />

CuNb2O6. This information could then be fed in to the construction of my pseudoternary<br />

phase diagram. Unfortunately, that mismatch on the rutile peak positions most likely<br />

rendered the quantification provided by SIeve+ untrustworthy.


Example 3: Two-­‐phase mixture of NaCl and Si<br />

In a 2011 training school, students were asked to perform quantitative phase analysis using<br />

the Rietveld method on a specimen that I had prepared. The specimen was 0.0641g NaCl<br />

and 0.0183g Si, therefore 77.79 wt% NaCl, 22.21 wt% Si. The Rietveld method is the best<br />

method for quantitative phase analysis, and the students were able to determine the<br />

correct phases to within a couple of wt%.<br />

I repeated the experiment using the SIeve+ software. I applied three basic filters: Na, Si<br />

and Cl were set to ‘Maybe’, all other elements were set to ‘No’, and the total number of<br />

elements in each card was to be 1 or 2 (this can be set in the ‘Elements’ tab).<br />

SIeve+ found the NaCl straight away:<br />

I accepted this card by clicking the handshake icon. SIeve+ then found the Si automatically –<br />

bear in mind that this is great data collected on a well-­‐prepared specimen of two things with<br />

simple crystal structures!


By also accepting the Si card, SIeve+ was also able to use the RIR method to give a<br />

quantification of the two phases, which is listed under I% near the bottom.<br />

SIeve+ was suggesting that the sample was 74 wt% NaCl, 26 wt% Si. Not a bad estimate –<br />

but bear in mind that the answer is good because we are expecting this answer… and that<br />

the errors inherent in the RIR method still apply.


Example 4: Data Mining<br />

The <strong>PDF</strong>-­‐<strong>4+</strong> 2011 software allows for some interesting and potentially useful data mining<br />

applications. As an example of the sort of thing that is possible, let us consider a study of<br />

the NaCl-­‐KCl solid solution series, Na1-­‐xKxCl. One thing we know about solid solutions is that<br />

they often follow Vegard’s Law, i.e. that the lattice parameters show a linear variation with<br />

composition.<br />

There are a lot of entries in the <strong>PDF</strong>-­‐<strong>4+</strong> 2011 database that would be relevant to this study,<br />

which will all have relevant lattice parameters listed… but how can we mine this data?<br />

Let us first set up our search filters. I’m only interested in good quality data collected at<br />

ambient conditions. I don’t want any high temperature/pressure data! I therefore set up<br />

the following filters on the Subfiles/Database Filters tab:<br />

- those cards not deleted by ticking the ‘not’ tickbox, and then clicking ‘Deleted’<br />

- those datasets collected under ambient conditions<br />

- those cards of ‘Star’, ‘Rietveld’ and ‘Indexed’ quality marks (using shift key and click<br />

to multi-­‐select)


Next, I select the elements of interest by going to the ‘Periodic Table’ tab, and the<br />

‘Yes/No/Maybe’ subtab. I ‘Set Unselected to ‘No’’ and then single-­‐click ‘Na’ and ‘K’ to add<br />

them to the Maybe list; I double-­‐click ‘Cl’ to add it to the ‘Yes’ list.<br />

Finally, as I don’t want to find Cl on its own, but only in combination with either Na or K, I go<br />

to the Elements tab and under ‘Number of Elements (#El’s) I select 2 and 3, again using shift<br />

key and click to multi-­‐select. When I click Search, a ‘Results’ child window appears listing all<br />

of the appropriate KCl, NaCl and Na1-­‐xKxCl database entries.<br />

I want to do some advanced stuff here, so I click ‘Edit’ and then ‘Preferences’. Because I<br />

want to look at how the lattice parameters vary with composition in these results, I need to<br />

add two ‘fields’ from the available fields list to the selected fields list: ‘Atomic%’ and<br />

‘AuthCell Vol’ for the composition and cell volume parameters, respectively. ‘Atomic%’ is<br />

listed under ‘+Elements’, while the cell parameters options are listed under ‘+Structures’.<br />

To add them to my Selected Fields list, I simply find and highlight them, then click the big<br />

blue ‘>’ button, then click OK when done.


Back in the ‘Results’ child window, I click in to the ‘Results’ menu and then ‘Graph Fields…’.<br />

On the X-­‐axis, I select ‘Atomic%’ from the drop down menu, and then set the Element to ‘K’.<br />

For the y-­‐axis, I select ‘AuthCell Vol’. Then I click ‘Create Graph’. A graph appears in a new<br />

child window, and it is apparent that there are a couple of weird outliers in the data. I hold<br />

the left-­‐mouse button to drag a box around the data of actual interest to me, which then<br />

appears zoomed in:<br />

From these data, it is apparent that, for this solid solution series, the lattice parameter<br />

increases linear with K content in accordance with Vegard’s Law! Clicking on any of the data<br />

points will open up the <strong>PDF</strong> card for that specific entry. Clicking ‘File’, then ‘Save’ allows you<br />

to save in *.jpg format, or as a *.csv file for further analysis in e.g. Excel.<br />

There are further examples of this process on the <strong>ICDD</strong>’s tutorial website, which can be<br />

accessed via the software’s help menu. Of particular relevance are the tutorials on Data<br />

Mining – Nonstoichiometric Oxides and Data Mining – Solid Solution. There are a lot of<br />

potential pitfalls with this sort of analysis, which are well covered in these online resources.


Further Reading<br />

The <strong>ICDD</strong> software has an extensive Help section which may be accessed via the software.<br />

Also, clicking on the Help menu will show the Tutorial link – clicking on this opens up the<br />

extensive array of online tutorial materials available on the <strong>ICDD</strong> website.<br />

References<br />

West, A.R., (1988). Basic Solid State Chemistry. John Wiley & Sons Ltd: Chichester.<br />

Pecharsky, V.K. & Zavalij, P.Y., (2005). Fundamentals of Powder Diffraction and Structural<br />

Characterization of Materials. Springer: New York.<br />

Clearfield, A., Reibenspies, J. & Bhuvanesh, N., (2008). Principles and Applications of<br />

Powder Diffraction. John Wiley & Sons Ltd: Chichester.<br />

Hyatt, N.C., (2008). MAT255: X-ray Diffraction. Lecture course notes.<br />

Help files attached to the <strong>ICDD</strong> <strong>PDF</strong>-<strong>4+</strong> and SIeve+ 2011 software packages.


Appendix 1: Conversion of ‘old’ to ‘new’ format <strong>PDF</strong> Card Numbers<br />

This is the identification number of the pattern in the Powder Diffraction File (<strong>PDF</strong>).<br />

Traditionally, the <strong>ICDD</strong> has employed a logical numbering process for giving each<br />

experimental <strong>PDF</strong> pattern a unique number. This is done by subtracting 1950 from the year<br />

of a given annual update then adding a further 4 digits from 0001 to 2500 (typically). For<br />

example, the first pattern in the 1997 update is 47-­‐0001 and the 2,500th is 47-­‐2500.<br />

Collaborations with other database organizations, FIZ in Karlsruhe (the ICSD database) and<br />

CCDC in Cambridge (the CSD database) and the National Institute of Science and Technology<br />

(NIST) and the Linus Pauling File (LPF) have led to a dramatic explosion in entry population.<br />

Provided the <strong>ICDD</strong> maintains the historical significance of experimental patterns in the <strong>PDF</strong>-­‐<br />

2, the 6-­‐digit entry system did not contain enough space to house all of these new entries.<br />

The solution was to add additional digits (an "area code") to the <strong>PDF</strong> number. The following<br />

schema has been implemented:<br />

The primary motive in this scheme is to leave the functional components of the <strong>PDF</strong> number<br />

intact. As seen in the Table, the new 9-­‐digit code allows the <strong>ICDD</strong> to avoid overlapping <strong>PDF</strong><br />

numbers between those entries from the CSD and those from the ICSD. The <strong>PDF</strong> number<br />

scheme was implemented for the first time in the <strong>PDF</strong>-­‐4/Organics 2003.<br />

Entries may be cross-­‐referenced.<br />

(Taken from Help files for <strong>PDF</strong>-­‐<strong>4+</strong> <strong>2012</strong> software)


Appendix 2: Quality Marks<br />

The editor of the <strong>PDF</strong> assigns the quality mark based upon an evaluation of the following<br />

parameters:<br />

• Formula checking including generation of an empirical formula.<br />

• Form of the chemical name and comparison with the formula for consistency.<br />

• Comparison of the measured, calculated, and estimated densities.<br />

• Validation of space group, aspect, or lattice type with allowed symbols and assigned<br />

crystal system.<br />

• Generation of Pearson symbols for structure types.<br />

• Refinement of d-­‐Spacings and confirmation of indexing with extinction rules for<br />

space groups.<br />

• The Smith-­‐Snyder and the deWolff figures of merit.<br />

The following quality mark definitions are available:<br />

• Star (S). Indicates the pattern represents high-­‐quality diffractometer or Guinier data.<br />

• Rietveld (R). The "R" quality mark is used for patterns where it is clear that the d-­‐<br />

values are directly the result of whole pattern fitting methods, such as the Rietveld<br />

or decomposition methods. The entry should meet all the requirements of a Star (S).<br />

• Indexed (I). Indicates the pattern has been indexed.<br />

• Blank (B). Indicates the pattern does not meet the Star, Indexed, or Low-­‐Precision<br />

criteria.<br />

• Low-­‐Precision (O). Indicates the diffraction data have been taken on poorly<br />

characterized material or that the data are known (or suspected) to be of low<br />

precision.<br />

• Calculated (C). Indicates the powder pattern was calculated from single-­‐crystal<br />

structural parameters, for which the structural refinement R-­‐factor was < 0.10.<br />

• Prototyping (P). Indicates the structural data that was assigned to a particular entry<br />

from the Linus Pauling File. Prototype structure is an editorial action to assign a<br />

space group and coordinates for entries that have not recovered this information<br />

from the primary literature.


• Hypothetical (H). Indicates the structure is calculated theoretically from the atomic<br />

positions and thermal parameters of an isostructural compound.<br />

• Good (G). Indicates the non-­‐crystalline pattern has no unit cell, but does have<br />

chemical analysis, characterization of local structure (either by pair distribution<br />

function or spectroscopy) and a good signal-­‐to-­‐noise.<br />

• Minimal Acceptable (M). Indicates the non-­‐crystalline pattern has a good signal-­‐to-­‐<br />

noise and a desirable chemical analysis.<br />

(Taken from Help files for <strong>PDF</strong>-­‐<strong>4+</strong> <strong>2012</strong> software)

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