total of 72 strains were used for the pathogenicitytest to IR BB21. The results showedthat all the strains of races IB and II werevirulent to IR BB21. In contrast, the strainsof races IA, III, IV, V and VII were avirulentto IR BB21. The lesion length on IR BB21ranged from 6.8 to 17.6 cm depending on thestrains inoculated. However, the lesionlength produced on IR BB21 after inoculationwith strains of races IB and II were significantlyshorter than that on IR24 afterinoculation with the same strains. Afterinoculation with incompatible races IA, III,IV, V and VII strains, only small lesions lessthan 1.4 cm in length appeared at the cutend of the leaf inoculated by clipping. Insome combinations, the inoculated leavesremained symptomless. Our results suggestthat Xa21 will not be useful in Japan whereX. oryzae pv. oryzae strains virulent to Xa21-harboring rice are widely distributed.AFLP markers useful for the mappingof avirulence gene, AvrPit in the riceblast fungus, Magnaporthe griseaThe fungal pathogen Magnaporthe griseais involved in specific interactions with riceFig. 9Deletion of the gene for the activation of transcription makes yeast cellshypersensitive against the killer protein (pink). On the other hand, inactivationof HDAC, which reduces transcription, makes the yeast cellsresistant (green).cultivars. Fungal strains with avirulencegenes are non-pathogenic to rice cultivarswhich contain corresponding race specificresistance genes. We have identified anavirulence gene (AvrPit) in a cross involvingisolates 4000-R-81 (MAT1-1) and 4084-1-4(MAT1-2). Using bulked segregant analysis(BSA), we identified closely linked AFLPmarkers to AvrPit segregating in this cross.Using 590 random progeny from the two differentcrossings of the same parental isolates,we constructed a partial genetic mapwith AFLP markers. Among these, AFLPmarkers NHA1, NHA7, NHA12, NHA14,NHA15 and NHA27 showed complete co-segregationwith AvrPit. We cloned and characterizedthese AFLP markers and found bySouthern blot analysis that each clone exceptfor NHA 14 was single-copied in the genome.Such markers should be quite useful for thepositional cloning of AvrPit.Hypersensitivity to Kluyveromyceslactis killer protein caused by thedefects in yeast RNA polymerase IItranscriptionKiller yeasts secrete proteinaceous toxins,which are lethal to sensitive strains.Kluyveromyces lactis killer protein causescell cycle arrest in G1 in sensitive Saccharomycescerevisiae strains. This arrestrequires a functional RNA polymerase IITOT/elongator complex. In a genetic studyof the killer sensitivity, the mutations in thegenes, which are involved in the transcriptionor affect the pol II machinery, causeddifferences in the sensitivity against thekiller protein. Some of the mutations in thecomponents of SAGA, SWI/SNF, Mediatorand Ccr4-Not complexes involved in transcriptionalprocess such as nucleosome modification,chromatin remodeling and formationof the preinitiation complex made yeast cellshypersensitive. Intriguingly, the inactivationof histone deacetylase (HDAC) activity,which is expected to reduce the demand forthe histone acetyltransferase (HAT) functionof TOT/elongator, reduced the sensitivity tothe killer protein.64 <strong>Annual</strong> <strong>Report</strong> <strong>2003</strong>
Change of the molecular weightforms of inhibins A and B with agein the bovine testisInhibin is a dimeric protein composed ofan subunit and either one of two subunits( A or B = inhibin A or B, respectively).Inhibin is synthesized as the largest precursorform (105 kDa), which is processed successivelyto form the lowest molecular massform (29~32 kDa) through the smaller 55, 65and 95 kDa forms. Clarification of the molecularweight profile of inhibin is importantfor further investigation of the role of inhibinin gonadal functions.In this study, we investigated alterationsin the molecular weight forms of inhibin inbull testis from the infantile to postpubertalperiods. The main findings of our study are:1) inhibins A and B are present in bull testisfrom the infantile to postpubertal periods, 2)infantile bull testis contains a significantamount of the precursor form of inhibins Aand B, 3) the proportion of the mature form(29~32 kDa) of inhibins A and B in the testesof adult bulls markedly increases, and 4)inhibin is exclusively found in Sertoli cellsuntil the postpubertal period (Fig. 10),although the immunoreaction diminished asthe bulls aged.Automatic classification of spotfeature in microarray imageA scratched DNA microarray image andan additive noise of the image reduce theaccuracy in analysis of gene expression. Thegene expression profile is determined basedon the intensity values of the spots inmicroarray. This numerical transformationleads to the loss of the potential informationon the microarray image, and makes it difficultto distinguish scratched spots and additivenoise spots from normal ones. Wepropose the method to detect the scratchedor the additive noise spots automatically,and to eliminate them. The mean, variance,skewness, kurtosis of intensity histogram,and the former statistical characteristics oftwo-dimensional spatial distribution of pixelon each spot are extracted from the microarrayimage. Spots are classified into fourgroups, normal, scratched, ring shaped spotslacking a center area, and additive noisespot, by the statistical characteristics.Support Vector Machines are used as clusteringalgorithm. The proposed method wasapplied to classify 219 spots of rice DNAmicroarray, using 630 spots as training data.The result was that the accuracy on normal,Fig. 10Immunohistochemical localization of inhibin in the testisat 5 wks (a, bar = 25 µm), 32 wks (b) and 50 wks (c) ofage.Counterstaining with hematoxylin was also performed.Arrows indicate Sertoli cells at 50 wks of age.Fig. 11Automatic classification of 219 spots of rice DNA microarray into four groups.<strong>Annual</strong> <strong>Report</strong> <strong>2003</strong> 65
- Page 3 and 4:
Message from the PresidentIn cooper
- Page 5 and 6:
¡X-ray crystallographic studies of
- Page 7 and 8:
Topics of Research in This YearComp
- Page 9 and 10:
Elucidation of genomic structure ar
- Page 11 and 12:
the total library) were mapped onto
- Page 13 and 14:
observed among the ribosomal protei
- Page 15 and 16:
molecular analyses and morphologica
- Page 17 and 18:
with 5 IU equine chorionic gonadotr
- Page 19 and 20: serious problem in rice production
- Page 21 and 22: exogenous genes into a hymenopteran
- Page 23 and 24: Isolation and characterization of B
- Page 25 and 26: oids could be regenerated from endo
- Page 27 and 28: Quantitative trait locus analyses o
- Page 29 and 30: ion, induces hypercholesterolemia,
- Page 31 and 32: is an important source for amino ac
- Page 33 and 34: In this study, 1.4 and 1.6 kb-long
- Page 35 and 36: aqueous solution using cyanuric chl
- Page 37 and 38: Developing a waste selection device
- Page 39 and 40: decreased every five days by 5˚C,
- Page 41 and 42: ticides. If the viral dose that kil
- Page 43 and 44: In addition, the number of crown ro
- Page 45 and 46: Molecular structure of the GARP fam
- Page 47 and 48: X-ray crystallographic studies ofSt
- Page 49 and 50: Rapid and high resolution QTL analy
- Page 51 and 52: Plant regeneration system through m
- Page 53 and 54: Table 1 Transformation Efficiency a
- Page 55 and 56: from the tissues of mutants. The In
- Page 57 and 58: the regenerated plants were transpl
- Page 59 and 60: plants and fungi, and RNA interfere
- Page 61 and 62: eeding, classification of microbes
- Page 63 and 64: efforts are made to obtain single m
- Page 65 and 66: was carried out by shotgun sequenci
- Page 67 and 68: epetitive sequence specific to Oryz
- Page 69: 75 µM of ABA at 25ºC. More than 8
- Page 73 and 74: A unique landrace group recognizedb
- Page 75 and 76: eaction (PCR) primer pairs to detec
- Page 77 and 78: This was the first successful case
- Page 79 and 80: to disappear by degradation or dilu
- Page 81 and 82: tained 1933 independent genes and b
- Page 83 and 84: that antigen-specific regulatory T
- Page 85 and 86: neural activity patterns evoked by
- Page 87 and 88: considerable effect on the suscepti
- Page 89 and 90: Insect Genetics and Evolution Depar
- Page 91 and 92: activity, which was found to detoxi
- Page 93 and 94: Insect Biomaterial and Technology D
- Page 95 and 96: peptides obtained from sericin a re
- Page 97 and 98: DNA markers for Nid-1, a resistance
- Page 99 and 100: or carotenoid pigment. When sericin
- Page 101 and 102: Plant Science DivisionThe Plant Sci
- Page 103 and 104: mutants have been studied in relati
- Page 105 and 106: have verified that candidate genes
- Page 107 and 108: and C, connected by a distorted typ
- Page 109 and 110: mammalian cells, respectively, inhi
- Page 111 and 112: undle sheath cells (BSCs), the land
- Page 113 and 114: (OsNHX1), barley (HvNHX1) and baril
- Page 115 and 116: nation rates. However, in our attem
- Page 117 and 118: Yeast two-hybrid assay showed inter
- Page 119 and 120: and a few NADPH-cytochrome P450 oxi
- Page 121 and 122:
the R0(53%).Foreign genes (35S + np
- Page 123 and 124:
gamma ray from 44 TBq 60 Co was use
- Page 125 and 126:
List of PublicationOriginal Papers1
- Page 127 and 128:
35 Fujisaki S, Mizoguchi Y, Takahas
- Page 129 and 130:
71 Imai K, Khandoker MY, Yonai M, T
- Page 131 and 132:
107 Kiuchi S, Inage Y, Hiraiwa H, U
- Page 133 and 134:
147 Miyamoto Y, Sakumoto R, Sakabe
- Page 135 and 136:
184 Ochi A, Hossain KS, Magoshi J,
- Page 137 and 138:
219 Takahashi M, Nagai T, Okamura N
- Page 139 and 140:
258 Watanabe H, Nakashima K, Saito
- Page 141 and 142:
Author Department Paper.No.Yasushi
- Page 143 and 144:
Author Department Paper.No.Sadao Wa
- Page 145 and 146:
Monograph1 Magoshi J, Nakamura S (2
- Page 147 and 148:
on Lepidopteran Genomics”.NIAS-CO
- Page 149 and 150:
tion of the high-quality draft sequ
- Page 151 and 152:
Executive Members andResearch Staff
- Page 153 and 154:
Insect Growth Regulation Laboratory
- Page 155 and 156:
Sericultural Science LaboratoryMole
- Page 157 and 158:
Members of NIAS EvaluationComittee(
- Page 159 and 160:
Annual Report 2003 153