Intel(R) - Computational and Systems Biology at MIT

Intel® Math Kernel Library User’s Guideenvironment variables, setting, 4-1exampleslinking, general, 5-7ScaLAPACK, Cluster FFT, linking with, 9-3FFFT functions, data alignment, 6-13FFT interfaceMKL_LONG type, 3-6optimized radices, 6-16threading tip, 6-12FFTW interface support, B-1Fortran-95, interfaces to LAPACK and BLAS, 7-2GGMP arithmetic functions, B-1GNU Multiple Precision Arithmetic Library, B-1HHT Technology, see Hyper-Threading technologyhybrid, version, of MP LINPACK, 10-4Hyper-Threading Technology, configuration tip, 6-14IILP64 programming, support for, 3-5installation, checking, 2-1interface layer, 3-4JJava examples, 7-10Llanguage interfaces support, A-1Fortran-95 interfaces, 7-2language-specific interfaces, 7-1LAPACKcalling routines from C, 7-4Fortran-95 interfaces to, 7-2packed routines performance, 6-13layercompiler support RTL, 3-4computational, 3-4interface, 3-4RTL, 3-3threading, 3-4layered model, 3-2Legacy OpenMP run-time compiler library, 5-10libraryrun-time, Compatibility OpenMP, 5-10run-time, Legacy OpenMP, 5-10library names, redefining in config file, 4-5library structure, 3-1link commandexamples, 5-7syntax, 5-3link librariesinterface, for the Absoft compilers, 5-9threading, 5-10linkage models, comparison, 5-2linking, 5-1default model, 5-4dynamic, 5-2pure layered model, 5-4recommendations, 5-3static, 5-1with Cluster FFT, 9-1with ScaLAPACK, 9-1LINPACK benchmark, 10-1Mmemory functions, redefining, 6-17memory management, 6-16memory renaming, 6-17mixed-language programming, 7-4module, Fortran-95, 7-4MP LINPACK benchmark, 10-4hybrid version, 10-4multi-core performance, 6-15Nnotational conventions, 1-4number of threadschanging at run time, 6-5Index-2