Intel(R) - Computational and Systems Biology at MIT

Language-specific Usage Options 7The Java example set includes JNI wrappers which perform the binding. The wrappers donot depend on the examples and may be used in your Java applications. The wrappers forCBLAS, FFT, VML, VSL RNG, and ESSL-like convolution and correlation functions do notdepend on each other.To build the wrappers, just run the examples (see the Running the examples section fordetails). The makefile builds the wrapper binaries and the examples, invoked after that,double-check if the wrappers are built correctly. As a result of running the examples, thefollowing directories will be created in/examples/java:• docs• include• classes• bin• _results .The directories docs, include, classes, and bin will contain the wrapper binaries anddocumentation; the directory _results will contain the testing results.For a Java programmer, the wrappers look like the following Java classes:• com.intel.mkl.CBLAS• com.intel.mkl.DFTI• com.intel.mkl.ESSL• com.intel.mkl.VML• com.intel.mkl.VSLDocumentation for the particular wrapper and example classes will be generated from theJava sources during building and running the examples. To browse the documentation,start from the index file in the docs directory which will be created by the build script:/examples/java/docs/index.html .The Java wrappers for CBLAS, VML, VSL RNG, and FFT establish the interface that directlycorresponds to the underlying native functions and you can refer to the Intel MKLReference Manual for their functionality and parameters. Interfaces for the ESSL-likefunctions are described in the generated documentation for the com.intel.mkl.ESSLclass.Each wrapper consists of the interface part for Java and JNI stub written in C. You can findthe sources in the following directory:/examples/java/wrappers .Both Java and C parts of the wrapper for CBLAS and VML demonstrate the straightforwardapproach, which you may easily employ to cover missing CBLAS functions.7-11