Intel(R) - Computational and Systems Biology at MIT

Overview 1Chapter 3Chapter 4Chapter 5Chapter 6Chapter 7Chapter 8Chapter 9Chapter 10Appendix AAppendix BThe document also includes an Index.Intel® Math Kernel Library Structure. Discusses the structure ofthe Intel MKL directory after installation at different levels of detailas well as the library versions and parts.Configuring Your Development Environment. Explains how toconfigure Intel MKL and your development environment for the usewith the library.Linking Your Application with Intel® Math Kernel Library.Compares static and dynamic linking models; describes the generallink line syntax to be used for linking with Intel MKL libraries;explains which libraries should be linked with your application foryour particular platform and function domain; discusses how tobuild custom dynamic libraries.Managing Performance and Memory. Discusses Intel MKLthreading; shows coding techniques and gives hardwareconfiguration tips for improving performance of the library;explains features of the Intel MKL memory management and, inparticular, shows how to replace memory functions that the libraryuses by default with your own ones.Language-specific Usage Options. Discusses mixed-languageprogramming and the use of language-specific interfaces.Coding Tips. Presents coding tips that may be helpful to meetcertain specific needs.Working with Intel® Math Kernel Library Cluster Software.Discusses usage of ScaLAPACK and Cluster FFTs mainly describinglinking of your application with these function domains, includingC- and Fortran-specific linking examples; gives information on thesupported MPI.LINPACK and MP LINPACK Benchmarks. Describes the Intel®Optimized LINPACK Benchmark for Linux* and Intel® OptimizedMP LINPACK Benchmark for Clusters.Intel® Math Kernel Library Language Interfaces Support.Summarizes information on language interfaces that Intel MKLprovides for each function domain.Support for Third-Party Interfaces. Describes in brief certaininterfaces that Intel MKL supports.1-3