Intel(R) - Computational and Systems Biology at MIT

7 Intel® Math Kernel Library User’s GuideIntel MKL Java examplesJava was positioned by its inventor, the Sun Microsystems Corporation as "Write Once RunAnywhere" (WORA) language. Intel MKL may help to speed-up Java applications, theWORA philosophy being partially supported, as Intel MKL editions are intended for widevariety of operating systems and processors covering most kinds of laptops and desktops,many workstations and servers.To demonstrate binding with Java, Intel MKL includes the set of Java examples found in thefollowing directory:/examples/java .The examples are provided for the following MKL functions:• the ?gemm, ?gemv, and ?dot families from CBLAS• complete set of non-cluster FFT functions• ESSL 1 -like functions for 1-dimensional convolution and correlation.• VSL Random Number Generators (RNG), except user-defined ones and filesubroutines.• VML functions, except GetErrorCallBack, SetErrorCallBack, andClearErrorCallBack.You can see the example sources in the following directory:/examples/java/examples .The examples are written in Java. They demonstrate usage of the MKL functions with thefollowing variety of data:• 1- and 2-dimensional data sequences• real and complex types of the data• single and double precision.However, note that the wrappers, used in examples, do not• demonstrate the use of huge arrays (>2 billion elements)• demonstrate processing of arrays in native memory• check correctness of function parameters• demonstrate performance optimizationsTo bind with Intel MKL, the examples use the Java Native Interface (JNI* developerframework). The JNI documentation to start with is available fromhttp ://java .sun .com/j2se/1.5.0/docs/guide/jni/index. html .1. IBM Engineering Scientific Subroutine Library (ESSL*).7-10