Sequencing
SFAF2016%20Meeting%20Guide%20Final%203
SFAF2016%20Meeting%20Guide%20Final%203
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11th Annual <strong>Sequencing</strong>, Finishing, and Analysis in the Future Meeting<br />
THURSDAY, 2ND JUNE<br />
07:30 ‐ 08:30 Breakfast (Sponsored by New England Biolabs)<br />
08:30 ‐ 08:45 Welcome Introduction and Opening Remarks<br />
08:45 ‐ 09:30 Dr. Pevzner, Keynote Address (Sponsored by Kapa Biosystems)<br />
09:30 ‐ 10:00 Dr. Borodovsky, Invited Speaker<br />
10:00 ‐ 10:20 Oral Session 4: Bioinformatics ‐ Assembly and Analysis<br />
Chaired by: Bob Fulton and Patrick Chain<br />
OS‐4.01 :: Estimating the effects of repeats on assembly contiguity<br />
10:20 ‐ 10:40 Coffee Break (Sponsored by 10x Genomics)<br />
10:40 ‐ 12:00 Oral Session 5: Bioinformatics ‐ Assembly and Analysis<br />
Chaired by: Donna Muzny and Alla Lapidus<br />
OS‐5.01 :: Nucleotid.es ‐ objective benchmarking of bioinformatics software<br />
OS‐5.02 :: Automation and Management of Influenza Next‐Generation <strong>Sequencing</strong> Data<br />
Analysis and Quality Control Procedures<br />
OS‐5.03 :: Distinguishing Outbreaks of Botulism Using a Reference‐based SNP Analysis<br />
and High Quality Reference Genome Sequences of Clostridium botulinum<br />
OS‐5.04 :: Importance of WGS for identifying environmental sources of Legionella<br />
pneumophila during outbreak investigations of Legionnaire's Disease<br />
12:00 ‐ 13:20 Lunch Break (Sponsored by MRIGlobal)<br />
13:20 ‐ 15:30 Oral Session 6: Forensics (Human and Microbial)<br />
Chaired by: Minh Nguyen and Michael Fitzgerald<br />
OS‐6.01 :: Targeted CRISPR/Cas9 DNA fragmentation and selective primer sequencing<br />
enables massively parallel microsatellite analysis<br />
OS‐6.02 :: Advancing Molecular Diagnostics in Sudden Unexplained Death – a New York<br />
City Experience<br />
OS‐6.03 :: Assessment of Single Nucleotide Polymorphism (SNP) Genotyping Chemistries<br />
and Comparison of Phenotypic and Ancestry Prediction Tools for Forensic Investigative<br />
Leads<br />
OS‐6.04 :: RIGEL: Analysis System for Microbial Attribution, Bioforensics and<br />
Biosurveillance<br />
OS‐6.05 :: Massively Parallel <strong>Sequencing</strong> Technologies for Expanded DNA Identification<br />
Capabilities at the Federal Bureau of Investigation Laboratory<br />
OS‐6.06 :: The Effect of Storage Time and Temperature on the Recovered Microbiome<br />
from Pubic Hairs<br />
OS‐6.07 :: National Institute of Justice Funding Opportunities<br />
15:30 ‐ 15:50 Coffee Break (Sponsored by Becton Dickinson)<br />
15:50 ‐ 17:45 Tech Time Talks 2<br />
Chaired by: Johar Ali and Kenny Yeh<br />
TT‐2.01 :: Direct determination of genome sequences<br />
TT‐2.02 :: Single‐Molecule Mapping with Solid‐State Detectors<br />
TT‐2.03 :: One Codex: Accurate, robust, and sensitive tools for applied microbial metagenomics<br />
TT‐2.04 :: A powerful method for comprehensive structural variation detection with<br />
short reads<br />
TT‐2.05 :: Analysis of The Functional Contents of Microbial Communities Using a Novel QIAGEN<br />
Bioinformatics Pipeline<br />
TT‐2.06 :: Geneious: a bioinformatics platform for biologists<br />
TT‐2.07 :: Artemisinin Drug Resistance Workflow for Plasmodium falciparum<br />
TT‐2.08 :: Towards building complete genome assemblies using BioNano Next‐<br />
Generation Mapping technology<br />
TT‐2.09 :: De Novo Assembly and Structural Variation Detection of Human Genomes using Single<br />
Molecule Next‐Generation Mapping and SV Call Validation by Inheritance and Orthogonal Measurements<br />
18:30 ‐ 20:30 Happy Hour(s) at Cowgirl Café, Sponsored by Illumina<br />
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