Sequencing
SFAF2016%20Meeting%20Guide%20Final%203
SFAF2016%20Meeting%20Guide%20Final%203
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11th Annual <strong>Sequencing</strong>, Finishing, and Analysis in the Future Meeting<br />
FRIDAY, 3RD JUNE<br />
07:30 ‐ 08:30 Breakfast (Sponsored by New England Biolabs)<br />
08:30 ‐ 08:45 Opening Remarks<br />
08:45 ‐ 09:30 Dr. Petrosino, Keynote Address (Sponsored by Qiagen)<br />
09:30 ‐ 10:50 Oral Session 7: Metagenomics<br />
Chaired by: Patrick Chain and Michael Fitzgerald<br />
OS‐7.01 :: <strong>Sequencing</strong> the elephant in the room: rapid resolution of whole genome<br />
sequences from uncultured bacteria in the human vaginal microbiome<br />
OS‐7.02 :: Task‐driven growth of SPAdes applications<br />
OS‐7.03 :: Assembling whole genomes from mixed microbial communities using Hi‐C<br />
OS‐7.04 :: Building Reference Materials for Mixed Microbial Detection with Next Generation<br />
<strong>Sequencing</strong><br />
10:50 ‐ 11:10 Coffee Break (Sponsored by Dovetail Genomics)<br />
11:10 ‐ 11:40 Mr. Lakey, Invited Speaker<br />
11:40 ‐ 13:00 Oral Session 8: Plants and the Fruit Fly<br />
Chaired by: Kenny Yeh and Johar Ali<br />
OS‐8.01 :: PacBio, Dovetail, and BioNano technologies enable quality plant genome<br />
assemblies<br />
OS‐8.02 :: A genome in the sugar beet field<br />
OS‐8.03 :: Trait mapping and improvement of the melon fly (Bactrocera cucurbitae)<br />
genome<br />
OS‐8.04 :: Characterizing chromosomal translocations associated with a genetic sexing<br />
system<br />
13:00 ‐ 14:00 Lunch Break (Sponsored by Dovetail Genomics)<br />
14:00 ‐ 15:40 Oral Session 9: Human Genomics<br />
Chaired by: Donna Muzny and Bob Fulton<br />
OS‐9.01 :: Improving genome analysis using Linked‐Reads<br />
OS‐9.02 :: A reference‐agnostic and rapidly queryable NGS read data format allows for<br />
flexible analysis at scale<br />
OS‐9.03 :: Reliable detection of Copy Number Variations based on data mining approaches<br />
OS‐9.04 :: Robust genome‐wide transcriptome enrichment sequencing for research and<br />
clinical platforms<br />
OS‐9.05 :: Deep RNA sequencing of Brassica rapa RIL population for SNP discovery, genetic<br />
map construction, eQTL analysis, and genome improvement<br />
15:40 ‐ 16:00 Coffee Break (Sponsored by Promega)<br />
16:00 ‐ 17:00 Oral Session 10: Human Clinical Dx and Analysis Pipelines<br />
Chaired by: Kenny Yeh and Michael Fitzgerald<br />
OS‐10.01 :: ASAP: A Customizable Amplicon <strong>Sequencing</strong> Analysis Pipeline for High‐<br />
Throughput Characterization of Complex Samples<br />
OS‐10.02 :: Evaluation of HiSeq X Ten Performance: Towards Clinical Applications<br />
OS‐10.03 :: YCGA Bioinformatics at Yale<br />
OS‐10.04 :: Scalable and extensible next‐generation sequence analysis pipeline<br />
management for over 50,000 whole‐genome samples<br />
17:00 ‐ 17:10 Closing Remarks<br />
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