17.02.2014 Views

Carlier Group Gaussian User Manual - Virginia Tech

Carlier Group Gaussian User Manual - Virginia Tech

Carlier Group Gaussian User Manual - Virginia Tech

SHOW MORE
SHOW LESS

Create successful ePaper yourself

Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.

<strong>Carlier</strong> <strong>Group</strong> <strong>Gaussian</strong> <strong>User</strong> <strong>Manual</strong> 37<br />

D. Obtaining thermodynamic parameters at any temperature<br />

<strong>Gaussian</strong> ’09 calculates thermodynamic parameters at STP (Standard Temperature and<br />

Pressure) which means 298.150 K and 1atm. Often, we desire these values at much<br />

lower temperatures. There is a utility built into <strong>Gaussian</strong> ’09 called freqchk. This<br />

utility pulls thermodynamic values from filename.chk, and recalculates them for<br />

whatever temperatures and/or pressures you specify. This is an easy method for<br />

changing temperature and pressure after the calculation is completed<br />

Example: (user input in bold)<br />

pcarlier@charon1:~/sgi/run> freqchk<br />

Checkpoint file? j0007.chk<br />

Write Hyperchem files? n<br />

Temperature (K)? [0=>298.15] 193<br />

Pressure (Atm)? [0=>1 atm] 0<br />

Scale factor for frequencies during thermochemistry? [0=>1/1.12]<br />

0.9804<br />

Do you want to use the principal isotope masses? [Y]: y<br />

---------------------------------------------------------------------<br />

Center Atomic Coordinates (Angstroms)<br />

Number Number X Y Z<br />

---------------------------------------------------------------------<br />

1 12 -0.286520 -0.578356 -1.611669<br />

2 17 -0.830292 -1.383436 0.657515<br />

3 8 -2.141684 0.267642 -2.142086<br />

(lots of data after this, then)<br />

Project out gradient direction? [N] n<br />

Notes on using this utility:<br />

Write Hyperchem files? I enter ‘no’.<br />

Temperature (K) [0=>298.15]: Entering 0 means the system will automatically assume<br />

you want to use the standard temperature of 298.150K (default temp). Any other<br />

temperature will be read as is (remember—use degrees Kelvin).<br />

Pressure (Atm)> [0=>1 atm]: As above, entering 0 will signify 1 atm (default pressure).<br />

Scaling factor [0=>1/1.12]: This value is specific to the method/basis set of the<br />

calculation. For each level of calculation there is an appropriate scaling factor to be<br />

applied. Entering 1, signifies no scaling.<br />

B3LYP/6-31G* = 0.9804<br />

Principal isotope masses? Select yes for this question. Otherwise it will ask you what<br />

mass you want to use for each atom.

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!