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Ryan’s MFP-3D Procedural Operation ‘Manualette’ Version 10 (v080501; Igor 6.04A); 12.4 color tables to display the image data with. <strong>St</strong>ored data channels. ARgyle 3D rendering- described in Section 13. Command Functions The ‘Commands’ pull-down menu offers a large variety of functions, most of which will be described below. Some of the more frequently used functions are also presented as buttons to the right of the Command pull-down menu- • Display Panel: this is where images can be more easily managed when there are many open in the software. The author doesn’t typically employ this because it would be a far too organized approach. • Modify Panel: this is where flattening, planefit, masking, filtering, FFT etc. is performed; See Section 12.2. • Analyze Panel: This is where roughness measurements, line sections and histograms of pixel data are created/ displayed /generated. See Section 12.5 for in-depth description of this. • List panel: Open images, change directories, save images, rename extract images. See Figure 12.1.2. • Extract Layer- this function can remove an image channel tab (the ‘layer’ ) out of the display window to be renamed and saved as a smaller file, OR do math / further processing. see Section 12.4.1. • Insert Layer- this function installs a layer back into the display window- see Sections 12.4.2 for examples. • Delete Layer- self explanatory. • Show Note- This is where every conceivable imaging/ system parameter can be viewed. • Change User Names- the author really have no idea what this does; maybe someday … • Save Image-This will save any modifications to the display window (e.g. Modified data or inserted layers in new tabs). See Section 12.3 for protocols. • Save then Kill Image- This saves the image, then closes the file •Export to Layout- This is a feature that lets electronic notebook style pages be prepared. Described in Sections 7.7E & 14.13. • Tiff exports: The number is the resolution of the Tiff, 1, 2, or 4 times the number of pixels in the image. These files can get very large, but are great for graphics that need to be displayed at larger scales (posters). • Set Layout Fields- This brings up a list of parameters to show when the export to Layout function is executed. • Crop Image- this throws away the cropped data if saved (i.e., you won’t get your won’t get the full image data back)- so make a copy of the raw data before you perform this; See Section 12.4.5 for protocol.
Ryan’s MFP-3D Procedural Operation ‘Manualette’ Version 10 (v080501; Igor 6.04A); 12.5 • Setup- selecting this function will bring up the ‘DisplayGraphBitControlPanel’, which is a control panel that allows selection of which panel shortcut buttons and image channel tabs to be displayed in the Display Window. The author prefers to have all options available out of habit. • Help- the help menus are very informative. • For Display Windows with many image channel tabs, small arrow buttons to the left of the image channel tabs allow the user to move left or right through the tabs (see red circle, image right). ARgyle 3D rendering- described in Chapter 13. 12.1.4: AR Thumbnail Viewer- On the non Igor/ MFP-3D software side, the AR thumbnail viewer is a nice feature if you need to dig through a lot of files looking for something specific in Windows XP file manager. Right click on an image file, and choose Properties. A panel similar to Figure 12.1.4 will appear. The Asylum Research tab will have a larger thumbnail of the stored image (you can choose what channel to display), and the lower portion of the panel has the pertinent scan parameters. 12.2: The Modify Panel- Figure 12.1.4: the AR thumbnail view lets users find pertinent information about stored data in what ever file manager you’re using. Properly processed images generally involve multiple steps: flattening (to some order), a plane-fit, masking features, proceeded by a final flatten. A brief description of these processes are described below in this Section (12.2).
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