12.01.2015 Views

Chem3D Users Manual - CambridgeSoft

Chem3D Users Manual - CambridgeSoft

Chem3D Users Manual - CambridgeSoft

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

Administrator<br />

If you want to<br />

display …<br />

information relative to<br />

other selected atoms,<br />

such as the distance<br />

between two atoms,<br />

the angle formed by<br />

three atoms, or the<br />

dihedral angle formed<br />

by four atoms.<br />

Then Select…<br />

measurement formed by all<br />

the selected atoms appears.<br />

Measurements<br />

• Select two non-bonded atoms and point to one<br />

of them.<br />

The interatomic non-bonded distance appears in<br />

the last line of the pop-up window.<br />

For example, in the cyclohexane model below,<br />

when you select two non-bonded atoms and point<br />

to one of them, the interatomic non-bonded<br />

distance appears in the last line of the pop-up<br />

window.<br />

the distance between<br />

the atoms attached by a<br />

bond in angstroms<br />

the bond orders<br />

calculated by Minimize<br />

Energy, Steric Energy,<br />

or Molecular<br />

Dynamics<br />

the partial charge<br />

according to the<br />

currently selected<br />

calculation<br />

Bond Length.<br />

Bond Order.<br />

Bond orders are usually<br />

1.000, 1.500, 2.000, or<br />

3.000 depending on<br />

whether the bond is a<br />

single, delocalized,<br />

double, or triple bond.<br />

Computed bond orders<br />

can be fractional.<br />

Partial Charge.<br />

See “Displaying<br />

Molecular Surfaces” on<br />

page 64 for information<br />

on how to select a<br />

calculation.<br />

Non-Bonded Distances<br />

To display non-bonded atoms measurements:<br />

Measurement Table<br />

Another way to view information about your model<br />

is to activate the Measurement Table. This table can<br />

display internal measurements between atoms in<br />

your model in various ways.<br />

To display internal measurements:<br />

1. From the View menu, click Measurement Table.<br />

A blank table appears in the Tables window.<br />

2. From the Structure menu, point to<br />

Measurements and select a measurement to<br />

display.<br />

The measurement values appear in the table.<br />

106•Inspecting Models<br />

<strong>CambridgeSoft</strong><br />

Measurement Table

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!