Chem3D Users Manual - CambridgeSoft

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Administrator To add to a group: 1. Select the objects you want to combine, using either Shift+click (contiguous) or Ctrl+click (non-contiguous). 2. Select Move Objects to Group from the Rightclick menu. 3. Rename the group, if necessary. NOTE: The order of selection is important. The group or chain you are adding to should be the last object selected. Pasting Substructures You can cut-and-paste or copy-paste any substructure into another structure, either within or between model windows. In addition to the usual methods—using the Cut, Copy, and Paste commands on either the Edit or Context-Sensitive menus, or Ctrl+X, Ctrl+C, and Ctrl+V—you can use the Text tool to paste substructures. If you want to… delete the group from the model Using the Display Mode Then Select… Delete Group and Contents One means of bringing out a particular part of a model is by changing the display mode. The usual limitations apply (see “Model Types” on page 56). The submenu will only display available modes. The following illustration shows the effect of changing the HEM155 group of PDB-101M from Wireframe (the default) to Space Filling. To paste a substructure with the Text tool: 1. Select a fragment, chain, or group. 2. Choose Replace with Text Tool from the Context-Sensitive menu. The substructure appears in a Text tool in the model window. 3. Click the Text tool on the atom that you want to link to the substructure. Deleting Groups When deleting groups, you have two options: Coloring Groups Another means of visualization is by assigning different colors to groups. Changing a group color in the Model Explorer overrides the standard color settings in the Elements table and the Substructures table. If you want to… remove the grouping, but leave the model intact Then Select… Delete Group To change a group color: 1. Select a group or groups. 2. Choose Select Color on the Right-click menu. The Color Dialog box appears. 3. Choose a color and click OK. 114•Inspecting Models <strong>CambridgeSoft</strong> Working With the Model Explorer
The Apply Group Color command is automatically selected. To revert to the default color: 1. Select a group or groups. 2. Right-click, point to Apply Group Color on the Context-Sensitive menu and select Inherit Group Color. The default group color is displayed. To view different frames of your movie: 1. Click the arrow on the Position button of the Movie toolbar. The Movie Process tool appears. Resetting Defaults To remove changes, use the Reset All Children command. Animations You can animate iterations from computations by saving frames in a movie.You control the creation and playback of movies from the Movie menu or toolbar. Creating and Playing Movies To display the Movie toolbar: • From the View menu, point to Toolbars and choose Movies. The Movie toolbar appears. To create a movie, select the Record Every Iteration checkbox when you set up the calculation. To stop recording click Stop Calculations on the Calculation toolbar Movie, or let the calculation terminate according to preset values. TIP: You can tear the toolbar off by dragging the title bar. 2. Drag the Slider knob to the frame you wish to view. TIP: You can also use the Previous and Next buttons to locate a frame in the movie. To play back a movie you created: • Click Start. To stop playback of a movie: • Click Stop. Spinning Models You can spin models about a selected axis. The number of frames created when you choose a Spin command is set using the Smoothness Slider in the Movies control panel. Spin About Selected Axis To spin the model around an axis specified by a selection: • Choose Spin About... from the Movie menu. The Spin About... command automatically activates the Record command. ChemOffice 2005/<strong>Chem3D</strong> Inspecting Models • 115 Animations
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ChemOffice.Com ® ChemOffice ® Che
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License Information ChemOffice, Che
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· Licensed users of ChemOffice Ent
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computer, except as provided below.
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Q: IS IT OK TO COPY MY COLLEAGUE’
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A Guide to CambridgeSoft Manuals An
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Administrator Setting Molecular Sur
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Administrator Methods Available in
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Administrator Defining Atom Types.
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Administrator The Calculation Toolb
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Administrator 30 •Chem3D Basics C
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Administrator In the Measurements t
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Administrator Tutorial 7: Docking M
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Administrator To save the iteration
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The allyl radical, CH 2 =CHCH 2·,
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Administrator atoms are relatively
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Property Description Property Descr
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Administrator 228• Accessing the
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Administrator Defining Substructure
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Desktop Software Enterprise Solutio
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SOLUTIONS Enterprise Solutions APPL
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Desktop to Enterprise Solutions Che
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SOFTWARE E-Notebook Ultra Ultimate
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SOFTWARE ChemDraw Ultra Ultimate Dr
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SOFTWARE Chem3D Ultra Ultimate Mode
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SOFTWARE ChemFinder/Word • Search
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SOFTWARE The Merck Index • Encycl
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SOLUTIONS •Development and deploy
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SOLUTIONS •Adds chemical data typ
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MANAGEMENT •Custom organization o
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MANAGEMENT • Indexes chemical str
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MANAGEMENT • E-Notebook Enterpris
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DISCOVERY • Accessed through your
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DISCOVERY • Integrated with Regis
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DISCOVERY • Reagent lists can be
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DISCOVERY •Effectively manages da
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DISCOVERY • Catalog driven data m
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DATABASES • Fully structure-searc
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DATABASES • Encyclopedic referenc
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DATABASES • Extensive collection
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SERVICES · Business Case Developme
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CS ChemOffice ® Desktop to Enterpr
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Chem3D Users Manual - CambridgeSoft

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