Chem3D Users Manual - CambridgeSoft

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Administrator atoms are relatively small. Their dot surfaces are obscured by the solid spheres. If another molecule were to react with this molecule, it would tend to react where the large clouds are, near the oxygen atom. 54 •Chem3D Tutorials CambridgeSoft Tutorial 10: Computing Partial Charges
Chapter 3: Displaying Models Overview You can display molecular models in several ways, depending on what information you want to learn from them. The atoms and bonds of a model can take on different appearances. These appearances are generically termed rendering types, and the term model display is used in Chem3D. Depending on the type of molecule, certain model displays may offer advantages by highlighting structural features of interest. For example, the Ribbons model display might be the option of choice to show the conformational folding of a protein without the distracting structural detail of individual atoms. Model display options are divided into two general types: • Structure displays • Molecular surface displays Structure Displays Structures are graphical representations based on the traditional physical three-dimensional molecular model types. The following structure display types are available from Model Display view of the Chem 3D Setting dialog box: • Wire Frame • Sticks • Ball and Stick • Cylindrical Bonds • Space Filling • Ribbons • Cartoons To change the default structural display type of a model: 1. From the File menu, choose Model Settings. The Chem 3D Setting dialog box appears. 2. Select the Model Display tab. The Model Display control panel of the Chem 3D Setting dialog box appears. 3. Set the new options. Model Display Tab Default Model Type ChemOffice 2005/Chem3D Displaying Models • 55 Structure Displays
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ChemOffice.Com ® ChemOffice ® Che
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License Information ChemOffice, Che
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· Licensed users of ChemOffice Ent
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computer, except as provided below.
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Q: IS IT OK TO COPY MY COLLEAGUE’
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A Guide to CambridgeSoft Manuals An
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Administrator Setting Molecular Sur
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Administrator For example, consider
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Administrator If you want to displa
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Administrator Example: To examine t
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Administrator Chem3D provides two o
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Administrator change a property. By
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Administrator To add to a group: 1.
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Administrator The van der Waals int
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Administrator A variety of other ba
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Administrator Molecular wave functi
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Administrator activation barriers.
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3. From the Calculations menu, poin
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Administrator • Overall errors in
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Desktop Software Enterprise Solutio
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SOLUTIONS Enterprise Solutions APPL
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Desktop to Enterprise Solutions Che
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SOFTWARE E-Notebook Ultra Ultimate
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SOFTWARE ChemDraw Ultra Ultimate Dr
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SOFTWARE Chem3D Ultra Ultimate Mode
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SOFTWARE ChemFinder/Word • Search
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SOFTWARE The Merck Index • Encycl
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SOLUTIONS •Development and deploy
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SOLUTIONS •Adds chemical data typ
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MANAGEMENT •Custom organization o
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MANAGEMENT • Indexes chemical str
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MANAGEMENT • E-Notebook Enterpris
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DISCOVERY • Accessed through your
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DISCOVERY • Integrated with Regis
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DISCOVERY • Reagent lists can be
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DISCOVERY •Effectively manages da
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DISCOVERY • Catalog driven data m
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DATABASES • Fully structure-searc
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DATABASES • Encyclopedic referenc
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DATABASES • Extensive collection
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SERVICES · Business Case Developme
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CS ChemOffice ® Desktop to Enterpr
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Chem3D Users Manual - CambridgeSoft

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