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Peptide-Based Drug Design

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46 Stegemann and Hoffmann<br />

positive ion-mode. Note that in negative ion mode the [M-H] − is detected and<br />

that in positive ion mode the [M+H] + signal at a 2 u higher mass is fragmented.<br />

22. When several samples are processed in parallel it is not possible to mix the SACA<br />

reagent with the reaction buffer to add the mixture to the dried peptide. In this<br />

case add first 2 �L reaction buffer to each sample to dissolve the peptide and add<br />

afterward 2 �L SACA reagent to each sample.<br />

Acknowledgment<br />

We thank Prof. Dr. Vladimir Kokryakov, Alexander Kolobov, and Ekaterina<br />

Korableva for providing peptide fractions with antimicrobial activities for<br />

sequence analysis. Financial support by the Deutsche Forschungsgemeinschaft<br />

(DFG) and the European Regional Development Fund (EFRE, European Union,<br />

and Free State Saxonia) is gratefully acknowledged.<br />

References<br />

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2. Toke, O. (2005) Antimicrobial peptides: new candidates to fight against bacterial<br />

infections. Biopolymers (<strong>Peptide</strong> Science) 80, 717–735.<br />

3. Hand, W.L. (2000) Current challenges in antibiotic resistance. Adolesc. Med. 11,<br />

427–438.<br />

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8. Yergey, A. L, Coorssen, J. R., Backlund, P. S. Jr., Blank, P. S., Humphrey, and G. A.,<br />

Zimmerberg, J. (2002) De novo sequencing of peptides using MALDI/TOF-TOF.<br />

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MALDI mass mapping. Anal Chem. 74, 1884–1890.<br />

11. Chen, P., Nie, S., Mi, W., Wang, X.-C., and Liang S.-P. (2004) De novo sequencing of<br />

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mass spectrometry. Rapid Commun. Mass Spectrom. 18, 191–198.<br />

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A case study of de novo sequence analysis of N-sulfonated peptides by MALDI<br />

TOF/TOF mass spectrometry. J. Am. Soc. Mass Spectrom. 15, 1838–1852.

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