You also want an ePaper? Increase the reach of your titles
YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.
46 Stegemann and Hoffmann<br />
positive ion-mode. Note that in negative ion mode the [M-H] − is detected and<br />
that in positive ion mode the [M+H] + signal at a 2 u higher mass is fragmented.<br />
22. When several samples are processed in parallel it is not possible to mix the SACA<br />
reagent with the reaction buffer to add the mixture to the dried peptide. In this<br />
case add first 2 �L reaction buffer to each sample to dissolve the peptide and add<br />
afterward 2 �L SACA reagent to each sample.<br />
Acknowledgment<br />
We thank Prof. Dr. Vladimir Kokryakov, Alexander Kolobov, and Ekaterina<br />
Korableva for providing peptide fractions with antimicrobial activities for<br />
sequence analysis. Financial support by the Deutsche Forschungsgemeinschaft<br />
(DFG) and the European Regional Development Fund (EFRE, European Union,<br />
and Free State Saxonia) is gratefully acknowledged.<br />
References<br />
1. Cohen, M.L. (2000) Changing patterns of infectious disease. Nature 406, 762–767.<br />
2. Toke, O. (2005) Antimicrobial peptides: new candidates to fight against bacterial<br />
infections. Biopolymers (<strong>Peptide</strong> Science) 80, 717–735.<br />
3. Hand, W.L. (2000) Current challenges in antibiotic resistance. Adolesc. Med. 11,<br />
427–438.<br />
4. Otvos L Jr. (2005) Antibacterial peptides and proteins with multiple cellular targets.<br />
J. Pept. Sci. 11, 697–706.<br />
5. Bulet, P., Stocklin, R., and Menin, L. (2004) Anti-microbial peptides: from invertebrates<br />
to vertebrates. Immunol. Rev. 198, 169–184.<br />
6. Brogden, K.A. (2005) Antimicorbial peptides: pore formers or metabolic inhibitors<br />
in bacteria? Nature Rev. 3, 238–250.<br />
7. Steen, H. and Mann, M. (2004) The ABC’s (and XYZ’s) of peptide sequencing.<br />
Nature Rev. Mol. Cell Biol. 5, 699–711.<br />
8. Yergey, A. L, Coorssen, J. R., Backlund, P. S. Jr., Blank, P. S., Humphrey, and G. A.,<br />
Zimmerberg, J. (2002) De novo sequencing of peptides using MALDI/TOF-TOF.<br />
J Am Soc Mass Spectrom 13, 784–791.<br />
9. Perkins, D.N., Pappin, D.J., Creasy, D.M., and Cottrell, J.S. (1999) Probabilitybased<br />
protein identification by searching sequence databases using mass<br />
spectrometry data. Electrophoresis 20, 3551–3567.<br />
10. Beardsley R.L. and Reilly J.P. (2002) Optimization of guanidination procedures for<br />
MALDI mass mapping. Anal Chem. 74, 1884–1890.<br />
11. Chen, P., Nie, S., Mi, W., Wang, X.-C., and Liang S.-P. (2004) De novo sequencing of<br />
tryptic peptides sulfonated by 4-sulfophenyl isothiocyanate for unambiguous protein<br />
identification using post-source decay matrix-assisted laser desorption/ionization<br />
mass spectrometry. Rapid Commun. Mass Spectrom. 18, 191–198.<br />
12. Samyn, B., Debyser, G., Sergeant, K., Devreese, B., and Van Beumen, J. (2004)<br />
A case study of de novo sequence analysis of N-sulfonated peptides by MALDI<br />
TOF/TOF mass spectrometry. J. Am. Soc. Mass Spectrom. 15, 1838–1852.