Inoculum 56(4) - Mycological Society of America
Inoculum 56(4) - Mycological Society of America
Inoculum 56(4) - Mycological Society of America
You also want an ePaper? Increase the reach of your titles
YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.
sequence <strong>of</strong> Monascus sp. BCRC 38072 was obtained by whole-genome shotgun<br />
<strong>of</strong> a variety <strong>of</strong> clone types at 11-fold sequence coverage. The Arachne package<br />
was used to assemble the genome sequence. A total <strong>of</strong> 673,853 highly qualified<br />
reads were input into the assembly program. The resulting draft consists <strong>of</strong> 709<br />
contigs, larger than 2 kb in length, with the total length <strong>of</strong> 26.8 Mb. Seventeen<br />
major supercontigs were assembled covering 94.8% <strong>of</strong> the whole assembly length<br />
and 422 ungrouped contigs were assembled in the rest 5.2%. The N50 lengths <strong>of</strong><br />
supercontig and contig are 2.5 Mb and 224 Kb, respectively. With the aid <strong>of</strong> 13<br />
known BAC and fosmid contigs, the draft was aligned to 99.1% <strong>of</strong> the known<br />
contigs sequences. A total <strong>of</strong> 6,855 unigenes were generated from 41,453 EST<br />
reads. Positions <strong>of</strong> 8,840 introns with an average size <strong>of</strong> 79 bp were identified on<br />
the draft and the GT-AG rule was conserved in most exon-intron boundary. More<br />
than 1,000 genes are considered as novel since no significant hit was found in<br />
public databases. A proteomic analysis <strong>of</strong> a pigment producing strain, along with<br />
its albino mutant, has been performed to investigate proteins related to pigment<br />
production. A total <strong>of</strong> 117 protein spots with significantly differential expression<br />
were obtained. These protein spots were identified by tandem mass spectrometry<br />
and Mascot search system. An online Monascus spp. proteome database has been<br />
constructed by integrating 2-DE experimental data and mass spectrometric identification<br />
data. This proteomic analysis shall provide useful information for further<br />
analysis <strong>of</strong> secondary metabolites production in Monascus spp. Polyketide<br />
(PK) synthesis genes and their products are the focus <strong>of</strong> Monascus functional genomic<br />
studies. Series <strong>of</strong> PK related gene transformants were generated in<br />
Monascus spp. Besides the conventional PEG-mediated transformation and electroporation,<br />
Agrobacteria-mediated gene transfer system adapted from plant systems<br />
was established and successfully used in Monascus spp. with high efficiency.<br />
The monacolin k gene cluster <strong>of</strong> Monascus sp. BCRC 38072 was cloned and<br />
examined in detail. Individual genes <strong>of</strong> the gene cluster were transformed and expressed<br />
in E. coli. The transformants with portion <strong>of</strong> the nine genes <strong>of</strong> the cluster<br />
produce a polyketide-like product. symposium presentation<br />
Zhang, Ning 1 *, Geiser, David M. 2 and Smart, Christine D. 1 1 Dept. <strong>of</strong> Plant<br />
Pathology, NYSAES, Cornell University, Geneva, NY 144<strong>56</strong>, USA, 2 Dept. <strong>of</strong><br />
Plant Pathology, Penn State University, University Park, PA 16802, USA.<br />
nz35@cornell.edu. Molecular detection <strong>of</strong> Fusarium solani species complex<br />
using macroarray.<br />
Members <strong>of</strong> Fusiarum solani species complex (FSSC) are pathogens <strong>of</strong> a<br />
number <strong>of</strong> plants, ubiquitous saprophytes in soil, and opportunistic human<br />
pathogens. Morphologically similar, molecular phylogenetic studies revealed that<br />
there are more than 40 distinct lineages (phylogenetic species) in FSSC. In this<br />
study, we designed oligonucleotides from internal transcribed spacer <strong>of</strong> the ribosomal<br />
RNA genes <strong>of</strong> 21 FSSC isolates in order to rapidly and accurately detect<br />
them from the field samples. Our hybridization results showed that the sensitivity<br />
and specificity <strong>of</strong> the array signals are dependent on the length and melting temperature<br />
<strong>of</strong> the oligomers. The 70-mers usually are able to discriminate three nucleotide<br />
mismatches, while the 20-mers with melting temperatures <strong>of</strong> 53 C-<strong>56</strong> C<br />
are able to discriminate a single nucleotide mismatch with the target DNA. Our<br />
optimized array is able to distinguish FSSC down to species level and even infraspecies<br />
level for certain groups. poster<br />
Zhou, Shuang* and Anagnost, Susan E. Faculty <strong>of</strong> Construction Management and<br />
Wood Products Engineering, State University <strong>of</strong> New York, College <strong>of</strong> Environmental<br />
Science and Forestry, Syracuse, NY 13210, USA. szhou@syr.edu. Morphological<br />
and molecular studies <strong>of</strong> basidiomycetes isolated from utility poles<br />
and air samples.<br />
The identities <strong>of</strong> cultures <strong>of</strong> basidiomycetes are important to the population<br />
study <strong>of</strong> fungi in wood products and indoor air from “sick” buildings, two growing<br />
fields <strong>of</strong> interest. Yet, the difficulties <strong>of</strong> observing diagnostic microscopic cultural<br />
characters make identification prolonged and slow. With molecular biology<br />
techniques, morphology and phylogeny <strong>of</strong> seventy basidiomycete cultures isolat-<br />
MSA ABSTRACTS<br />
ed from utility poles and air samples in the city <strong>of</strong> Syracuse, NY were studied.<br />
Their ITS rDNA sequences were obtained using universal primers ITS4 and<br />
ITS5; phylogeny analysis was conducted using PAUP; cultural morphologies<br />
were observed using phase contrast illumination after phloxine staining. In our<br />
study, both morphology and molecular methods showed their strengths and limitations<br />
in identifying fungi. To use them complementarily was essential to my<br />
study. The basidiomycetes isolated from indoor air samples are wood-decay basidiomycetes,<br />
such as Trametes versicolor, Peniophora nuda/cinerea, Stereum<br />
sanguinolentum. The comparison <strong>of</strong> isolation numbers from indoor and outdoor<br />
air samples indicated a possible past water damage and on-going decaying <strong>of</strong><br />
wood structures <strong>of</strong> the houses. Cultural characters and phylogeny <strong>of</strong> several representative<br />
genera will be presented. poster<br />
Zitomer, Nickolas C. 1 *, Geiser, David M. 1 , Archibald, D. D. 2 , Ward, T. J. 3 , O’-<br />
Donnell, Kerry 3 , Jones, A. D. 4 , Jimenez-Gasco, M. M. 1 and Kuldau, Gretchen A. 1<br />
1 Department <strong>of</strong> Plant Pathology, 2 Department <strong>of</strong> Crop and Soil Sciences, 4 Department<br />
<strong>of</strong> Chemistry, The Pennsylvania State University, University Park PA,<br />
USA, 3 Microbial Genomics and Bioprocessing Research Unit, National Center<br />
for Agricultural Utilization Research, USDA, Peoria, IL 61604-3999, USA.<br />
ncz103@psu.edu. HPLC-MS analysis <strong>of</strong> type-A trichothecene-producing<br />
fusaria for correspondence between toxin pr<strong>of</strong>iles and molecular phylogenetic<br />
groups.<br />
Trichothecenes are mycotoxins produced by many Fusarium species.<br />
Fusarium trichothecenes are generally divided into two categories, type A, which<br />
lack oxygen at the C-8 position and include T-2 toxin and diacetoxyscirpenol, and<br />
type B, which include nivalenol and deoxynivalenol. Phylogenetic relationships<br />
<strong>of</strong> trichothecene-producing fusaria (TPF) were inferred based on DNA sequences<br />
from seven gene regions, EF1-a translation elongation factor, phosphate permease,<br />
28SrDNA, Tri101, Tri4, Tri5, and B-tubulin, determined in isolates comprising<br />
the known species diversity <strong>of</strong> TPF. The TPF was found to represent a monophyletic<br />
group. Gene genealogies independently supported the existence <strong>of</strong> four<br />
major clades within the TPF, one <strong>of</strong> which represented a species complex that includes<br />
the major type B trichothecene producers Gibberella zeae and its relatives.<br />
Across all four clades, at least thirty species lineages were identified based on genealogical<br />
concordance. The production <strong>of</strong> five type A and five type B trichothecenes<br />
was analyzed using high performance liquid chromatography and atmospheric<br />
pressure chemical ionization mass spectrometry (HPLC/APCI-MS) in<br />
rice cultures <strong>of</strong> isolates representing the phylogenetic breadth <strong>of</strong> TPF. The production<br />
<strong>of</strong> type B trichothecenes was found to be widespread, occurring in species<br />
across the TPF, including species known only to be type A producers. contributed<br />
presentation<br />
Zuccaro, Alga 1 * and Mitchell, Julian, I. 2 1 Institut für Mikrobiologie, Technische<br />
Universität Braunschweig, Spielmannstr. 7, D-38106 Braunschweig, Germany,<br />
2 University <strong>of</strong> Portsmouth, School <strong>of</strong> Biological Sciences, King Henry Building,<br />
Portsmouth PO1 2DY, England. a.zuccaro@tu-bs.de. Development and application<br />
<strong>of</strong> real-time PCR approach for detection and quantification <strong>of</strong> the marine<br />
fungus Acremonium fuci beta tubulin sequences from its algal host.<br />
A TaqMan real time quantitative PCR assay targeting the intron 3 <strong>of</strong> the beta<br />
tubulin gene was developed to monitor the colonization rate <strong>of</strong> the saprophytic marine<br />
fungus Acremonium fuci in algal host tissues. Twenty-one healthy-looking and<br />
six decaying Fucus serratus independent tissue samples <strong>of</strong> ten grams each were<br />
analysed. The results were concordant with those obtained using a conventional<br />
nested PCR amplification <strong>of</strong> 28S rDNA fungal sequences from algal tissue and<br />
DGGE analysis, as well as with the recovery rate <strong>of</strong> A. fuci isolates after culturing.<br />
The real time procedure showed a higher abundance <strong>of</strong> the fungus in the dead compared<br />
to the living tissues <strong>of</strong> the alga, suggesting a latency <strong>of</strong> the fungus in healthy<br />
tissues. This apparent latency may represent an adaptive strategy <strong>of</strong> the saprobe for<br />
rapid colonization <strong>of</strong> the decaying material. contributed presentation<br />
<strong>Inoculum</strong> <strong>56</strong>(4), November 2005 67