VnmrJ Command and Parameter Reference VnmrJ 2.2D

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dc Calculate spectral drift correction (C) ............................................ 130 dc2d Apply drift correction to 2D spectra (C)......................................... 130 dcg Drift correction group (P) ............................................................... 130 dcon Display noninteractive color intensity map (C).............................. 130 dconi Interactive 2D data display (C)....................................................... 131 dconi Control display selection for the dconi program (P)....................... 133 dconn Display color intensity map without screen erase (C) .................... 134 dcrmv Remove dc offsets from FIDs in special cases (P) ......................... 134 ddf Display data file in current experiment (C) .................................... 134 ddff Display FID file in current experiment (C) .................................... 134 ddfp Display phase file in current experiment (C).................................. 135 ddif Synthesize and show DOSY plot (C) ............................................. 135 ddrcr Direct digital receiver coefficient ratio (P) ..................................... 135 ddrpm Set ddr precession mode (P) ........................................................... 136 ddrtc Set ddr time constant (P)................................................................. 136 dds Default display (M)......................................................................... 136 dds_seqfil Sequence-specific default display (M) ........................................... 137 debug Trace order of macro and command execution (C) ........................ 137 decasynctype Select the type of decoupler asynchronous mode (P) ..................... 137 deccwarnings Control reporting of DECC warnings from PSG (P)...................... 138 decomp Decompose a VXR-style directory (M).......................................... 138 def_osfilt Default value of osfilt parameter (P) .............................................. 138 defaultdir Default directory for Files menu system (P)................................... 139 delcom Delete a user macro (M) ................................................................. 139 delete Delete a file, parameter directory, or FID directory (C) ................. 139 delexp Delete an experiment (M) ............................................................... 139 deletenucleus Removes nucleus entry from current probe file (M) ...................... 140 dels Delete spectra from T 1 or T 2 analysis (C)....................................... 140 delta Cursor difference in directly detected dimension (P) ..................... 140 delta1 Cursor difference in 1st indirectly detected dimension (P) ............ 141 delta2 Cursor difference in 2nd indirectly detected dimension (P) ........... 141 deltaf Difference of two time-domain cursors (P) .................................... 141 Dept Set up parameters for DEPT experiment (M) ................................. 141 deptgl Set up parameters for DEPTGL pulse sequence (M)...................... 141 deptproc Process array of DEPT spectra (M) ................................................ 142 destroy Destroy a parameter (C).................................................................. 142 destroygroup Destroy parameters of a group in a tree (C).................................... 142 df Display a single FID (C)................................................................. 143 df2d Display FIDs of 2D experiment (C) ............................................... 143 dfid Display a single FID (C)................................................................. 144 dfmode Current state of display of imaginary part of a FID (P).................. 144 dfrq Transmitter frequency of first decoupler (P) .................................. 144 dfrq2 Transmitter frequency of second decoupler (P).............................. 144 dfrq3 Transmitter frequency of third decoupler (P) ................................. 144 dfrq4 Transmitter frequency of fourth decoupler (P) ............................... 145 dfs Display stacked FIDs (C)................................................................ 145 dfsa Display stacked FIDs automatically (C)......................................... 146 dfsan Display stacked FIDs automatically without screen erase (C) ....... 146 dfsh Display stacked FIDs horizontally (C) ........................................... 146 dfshn Display stacked FIDs horizontally without screen erase (C).......... 147 dfsn Display stacked FIDs without screen erase (C) .............................. 147 dfww Display FIDs in whitewash mode (C)............................................. 147 dg Display group of acquisition/processing parameters (C)................ 147 dg Control dg parameter group display (P) ......................................... 148 dg1 Display group of display parameters (M) ....................................... 148 dg1 Control dg1 parameter group display (P) ....................................... 148 dg2 Display group of 3rd and 4th rf channel/3D parameters (M) ......... 148 dg2 Control dg2 parameter group display (P) ....................................... 149 dga Display group of spin simulation parameters (M) .......................... 149 DgcsteSL Set up parameters for DgcsteSL pulse sequence (M) ..................... 149 Dgcstecosy Set up parameters for Dgcstecosy pulse sequence (M) .................. 149 Dgcstehmqc Set up parameters for Dgcstehmqc pulse sequence (M)................. 149 01-999380-00 A 0808 Command and Parameter Reference for VnmrJ 2.2D 7
dglc Display group of LC-NMR parameters (M) ................................... 150 dglc Control dglc parameter group display (P)....................................... 150 dglp Display group of linear prediction parameters (C) ......................... 150 dgs Display group of shims and automation parameters (M) ............... 150 dgs Control dgs parameter group display (P)........................................ 150 dhp Decoupler high-power control with class C amplifier (P).............. 151 dialog Display a dialog box from a macro (C) .......................................... 151 diffparams Report differences between two parameter sets (U)...................... 151 diffshims Compare two sets of shims (M,U).................................................. 152 digfilt Write digitally filtered FIDs to another experiment (M) ................ 152 dir List files in directory (C) ................................................................ 152 display Display parameters and their attributes (C) .................................... 153 dla Display spin simulation parameter arrays (M) ............................... 153 dlalong Long display of spin simulation parameter arrays (C) ................... 154 dli Display list of integrals (C)............................................................. 154 dlivast Produce text file and process wells (M).......................................... 154 dll Display listed line frequencies and intensities (C).......................... 155 dlni Display list of normalized integrals (M)......................................... 155 dlp Decoupler low-power control with class C amplifier (P) ............... 156 dm Decoupler mode for first decoupler (P) .......................................... 156 dm2 Decoupler mode for second decoupler (P) ..................................... 156 dm3 Decoupler mode for third decoupler (P) ......................................... 157 dm4 Decoupler mode for fourth decoupler (P)....................................... 157 dmf Decoupler modulation frequency for first decoupler (P)................ 157 dmf2 Decoupler modulation frequency for second decoupler (P) ........... 158 dmf3 Decoupler modulation frequency for third decoupler (P)............... 158 dmf4 Decoupler modulation frequency for fourth decoupler (P) ............ 158 dmfadj Adjust tip-angle resolution time for first decoupler (M) ................ 159 dmf2adj Adjust tip-angle resolution time for second decoupler (M)............ 159 dmf3adj Adjust tip-angle resolution time for third decoupler (M) ............... 159 dmf4adj Adjust tip-angle resolution time for fourth decoupler (M) ............. 160 dmg Data display mode in directly detected dimension (P) ................... 160 dmg1 Data display mode in 1st indirectly detected dimension (P) .......... 161 dmg2 Data display mode in 2nd indirectly detected dimension (P) ......... 161 dmgf Absolute-value display of FID data or spectrum in acqi (P) .......... 161 dmm Decoupler modulation mode for first decoupler (P)....................... 162 dmm2 Decoupler modulation mode for second decoupler (P) .................. 162 dmm3 Decoupler modulation mode for third decoupler (P)...................... 163 dmm4 Decoupler modulation mode for fourth decoupler (P).................... 163 dn Nucleus for first decoupler (P)........................................................ 163 dn2 Nucleus for second decoupler (P)................................................... 164 dn3 Nucleus for third decoupler (P) ...................................................... 164 dn4 Nucleus for fourth decoupler (P) .................................................... 164 dndfid Retrieve and process fid data from the locator (M) ........................ 165 dndjoin Join a work space from the locator (M).......................................... 165 dndpar Retrieve a parameter set from the locator (M)................................ 165 dndshims Retrieve a shimset set from the locator (M) ................................... 165 dnode Display list of valid limNET nodes (M,U) ..................................... 166 doautodialog Start a dialog window using def file (M)...................................... 166 dodialog Start a dialog window with dialoglib file (M) ......................... 166 dof Frequency offset for first decoupler (P).......................................... 166 dof2 Frequency offset for second decoupler (P) ..................................... 166 dof3 Frequency offset for third decoupler (P)......................................... 167 dof4 Frequency offset for fourth decoupler (P) ...................................... 167 Doneshot Set up parameters for Doneshot pulse sequence (M) ..................... 167 dopardialog Start a dialog with dialoglib/experiment def file (M) .... 167 do_pcss Calculate proton chemical shifts spectrum (C)............................... 167 dosy Process DOSY experiments (M)..................................................... 168 dosy2d Apptype macro for dosy 2D experiments (M)................................ 168 dosyfrq Larmor frequency of phase encoded nucleus in DOSY (P)............ 168 dosygamma Gyromagnetic constant of phase encoded nucleus in DOSY (P) ... 169 dosytimecubed Gyromagnetic constant of phase encoded nucleus in DOSY (P) ... 169 8 Command and Parameter Reference for VnmrJ 2.2D 01-999380-00 A 0808
Page 1 and 2: VnmrJ Command and Parameter Referen
Page 3 and 4: VnmrJ Command and Parameter Referen
Page 5 and 6: 2 Command and Parameter Reference f
Page 7 and 8: arraydim Dimension of experiment (P
Page 9: copy Copy a file (C) ..............
Page 13 and 14: dsshn Display stacked spectra horiz
Page 15 and 16: gcal Gradient calibration constant
Page 17 and 18: homo3 Homodecoupling control for th
Page 19 and 20: loadcolors Load colors for graphics
Page 21 and 22: Noesy Convert the parameter to a NO
Page 23 and 24: plcosy Plot COSY- and NOESY-type sp
Page 25 and 26: R r Recall display parameter set (M
Page 27 and 28: seqfil Pulse sequence name (P).....
Page 29 and 30: sqsavestudy Macro to save study par
Page 31 and 32: updaterev Update after installing n
Page 33 and 34: xm1 Utility macro for study queue e
Page 35 and 36: 32 Command and Parameter Reference
Page 37 and 38: Notational Conventions md(to_exp) n
Page 39 and 40: A aph aph0 aphb aphx appdirs appmod
Page 41 and 42: A See also: parent (nested) macros
Page 43 and 44: A acosy Syntax: Description: See al
Page 45 and 46: A spin sw vp vs wp Sample spin rate
Page 47 and 48: A window should open automatically
Page 49 and 50: A See also: 595. Sample failed to i
Page 51 and 52: A spadd sub Add current spectrum to
Page 53 and 54: A Examples: See also: • 'ss' spec
Page 55 and 56: A Examples: See also: adept adept('
Page 57 and 58: A lock sample Submit an Autolock ex
Page 59 and 60: A Arguments: (3) Line containing an
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A See also: VnmrJ User Programming
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A appmode Description: Values: Appl
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A asin Find arc sine of number (C)
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A Arguments: Examples: When called
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A go_ load loc lock method sample s
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A Aufindz0 Automatic adjustment of
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A Values: 'y' indicates automation
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A Description: Arguments: Examples:
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A Examples: Examples: See also: >9
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A See also: NMR Spectroscopy User G
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A Examples: See also: number_argume
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A dscale pscale Display scale below
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B Arguments: Examples: See also: me
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B This command should rarely be use
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B See also: NMR Spectroscopy User G
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B 88 Command and Parameter Referenc
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C contact_time MAS cross-polarizati
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C Description: See also: Calculates
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C See also: 127 for imaging attenua
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C See also: NMR Spectroscopy User G
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C Description: checkstring is used
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C clfreq Description: See also: Cal
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C it runs in interactive mode; if n
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C Arguments: Examples: See also:
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C Description: Arguments: See also:
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C Examples: See also: • -dxxx, wh
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C Dqcosy relayh Set up parameters f
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C Related: apptype Application type
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C cr2 Description: See also: Cursor
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C crl Description: See also: Clear
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C See also: NMR Spectroscopy User G
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C 120 Command and Parameter Referen
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D delta Cursor difference in direct
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D dosygamma dosytimecubed dot1 dotf
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D See also: If d0='n', the software
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D daslp Description: Values: See al
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D dc Description: See also: Calcula
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D Arguments: Examples: See also: ds
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D ft2d imconi wft2d Fourier transfo
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D Syntax: Description: ddrcr= Sets
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D dm2 dm3 Decoupler mode for second
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D Description: Arguments: Examples:
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D deptproc Description: See also: P
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D dfid Syntax: Description: See als
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D ho plfid pfww sc vo vpf wc Horizo
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D Arguments: Examples: See also: te
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D See also: NMR Spectroscopy User G
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D Examples: in these directories. T
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D nli z Find integral values (C) Ad
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D Values: See also: 5 Hz to 2 MHz i
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D Description: Arguments: Examples:
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D See also: outside of the acqi pro
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D dnode Applicability: Description:
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D Examples: See also: max_width is
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D Values: See also: deltaf (if the
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D See also: dpf('top','noll') dpf('
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D dplane Syntax: Description: Argum
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D Arguments: See also: The pulse pa
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D CAUTION: See also: Decoupling pow
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D Examples: See also: • 'xor','no
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D ds Syntax: Description: Arguments
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D Examples: See also: ds2dn ds2dn('
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D dseq4 Applicability: Description:
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D Values: See also: the digital fil
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D dsp Applicability: Description: V
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D Arguments: Examples: See also: Th
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D step is the increment for the spe
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D dsww ft1d ho intmod pl plww sc sc
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D dsvast2d Display VAST data in a p
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D homorof3 tn Delay between setting
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E See also: NMR Spectroscopy User G
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E enter Applicability: Syntax: Desc
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E ewrite Applicability: Syntax: Des
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E keyword 'maclib' 'command' 'ascii
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E exit Description: CAUTION: Call t
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E Arguments: Examples: See also: (3
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E Syntax: Description: Arguments: E
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F foldcc foldj foldt fontselect for
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F make3dcoef par2d Make 3D coeffici
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F Examples: See also: v1, v2... is
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F fiddleu Perform reference deconvo
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F Arguments: Examples: See also: st
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F slfreq sp usemark wp Measured lin
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F Arguments: Examples: See also: nf
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F focus Description: See also: Send
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F See also: format($snum,3,1):$rval
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F Examples: See also: type of tree
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F Examples: See also: start is the
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F See also: NMR Spectroscopy User G
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F • 'noop' is a keyword to not pe
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F See also: • 'ni2' is a keyword
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F Arguments: ft3d Entered from UNIX
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F make3dcoef ptspec3d set3dproc spe
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G gHSQC_d213 Ghsqctoxy gilson gin g
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G examined for signal level. If the
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G See also: Be aware that if an old
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G Examples: See also: extension is
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G Examples: See also: • 'xall' is
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G Arguments: Examples: See also: A
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G See also: detected dimension. Thi
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G gilson Syntax: Description: See a
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G Values: 'n' disable spinning duri
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G gmax Description: See also: Maxim
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G go seqfil usergo Submit experimen
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G grayctr Gray level window adjustm
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G gtnroesy Applicability: Descripti
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G 274 Command and Parameter Referen
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H homo2 homo3 homo4 HOMODEC homo2d
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H See also: j2r is the reduced coup
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H Examples: See also: hcdept hcdept
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H homo homorof1 homorof2 homorof3 t
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H Examples: See also: hdwshimlist='
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H HMQC_d2 Description: Set up param
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H Related: dm3 Decoupler mode for t
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hoult Set parameters alfa and rof2
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H hsqctoxySE Description: Set up pa
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H htss1 Description: Values: See al
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H 296 Command and Parameter Referen
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I ihwinfo Syntax: Description: Argu
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I Examples: See also: dir_flag imag
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I See also: fn. The insref paramete
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I See also: NMR Spectroscopy User G
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I category type gettype returns str
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I 308 Command and Parameter Referen
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J Arguments: Examples: See also: ex
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J jviewports Viewport layout (P) De
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K See also: NMR Spectroscopy User G
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K 316 Command and Parameter Referen
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L lp1 lp2 lpalg lpalg1 lpalg2 lpext
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L Values: See also: A positive valu
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L legrelay Description: Values: See
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L See also: in Hz, analogous to sfr
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L Examples: See also: • 'comment'
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L Examples: See also: ln(.5) ln(val
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L Values: See also: 1, 2, 3, or 4 (
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L See also: User Guide: Solid-State
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L See also: lookup('delimiter',' ,\
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L strtlp strtext Starting point for
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L lpfilt ni LP coefficients to calc
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L lpprint Description: Values: See
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L Arguments: Examples: directory is
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L lsfrq1 Description: Values: Frequ
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L 346 Command and Parameter Referen
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M movetof mp mqcosy mrev8 mrfb mref
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M Arguments: Examples: See also: ov
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M make3dcoef Syntax: Description: A
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M element_number and format argumen
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M Description: Arguments: (5) mark
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M Values: See also: Note that the V
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M mf Syntax: Description: Arguments
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M mfopen mftrace rfblk rftrace Memo
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M mlabel Description: See also: Men
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M Examples: See also: mp(4) mp(2,3)
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M Description: Examples: An array o
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M CAUTION: See also: One special ca
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N newmenu Syntax: Description: Argu
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N ni3 Description: See also: Number
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N Arguments: Examples: See also: 'p
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N r6 returns the percentage channel
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N ntrig Applicability: Description:
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N 382 Command and Parameter Referen
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O Arguments: Examples: See also: %d
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O paros sw Create additional parame
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O 'n' causes normal acquisition to
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P pboxpar pboxrst pboxunits pcon pc
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P prescan_CoilTable prescan_tn prin
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P Description: Values: See also: Sp
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P See also: The pa1 command is only
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P page Description: Name of page (P
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P Description: See also: Creates th
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P See also: The quality of filterin
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P See also: User Programming Relate
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P See also: NMR Spectroscopy User G
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P pboxpar Syntax: Description: Argu
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P See also: User Programming Relate
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P Values: See also: A three-charact
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P Examples: See also: reference_reg
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P phase Syntax: Description: Argume
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P phfid1 Description: Values: See a
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P pintvast Applicability: Syntax: D
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P ft1d ho intmod plww pshr pslw sc
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P plate_glue Applicability: Descrip
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P vpf wc Current vertical position
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P • Negative or positive contours
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P Related: protune Macro to start P
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P plothiresprep High resolution plo
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P p1 pw First pulse width (P) Pulse
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P Examples: See also: pprofile ppro
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P Examples: str is a string that ca
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P See also: VnmrJ User Programming
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P See also: proc1d does not work wi
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P Description: Arguments: Examples:
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P Third case: exec — keyword that
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P Examples: See also: C3 sets lb1=-
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P See also: searched for when an ex
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P sw sw1 sw2 Spectral width in dire
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P See also: point are used in the s
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P Arguments: Examples: See also: fi
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P 466 Command and Parameter Referen
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Q ? Display the value of an individ
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R rfband rfblk rfchannel rfchtype r
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R See also: experiment with the rt
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R Examples: The par1 and par2 param
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R Examples: See also: readhw('z1c',
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R Description: Produces 2D images (
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R record Syntax: Description: Argum
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R Related: reff1 Reference f2 Indir
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R See also: if it is a heteronuclea
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R the current tree, if it exists th
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R vnmrjcmd() wp Commands to invoke
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R Arguments: Examples: See also: us
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R Values: See also: The values of r
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R rfp Description: Values: See also
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R rfwg Description: Values: See als
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R rl rl2 scalesw1 sfrq Set ref. lin
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R See also: NMR Spectroscopy User G
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R See also: NMR Spectroscopy User G
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R Examples: See also: noabort — k
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S setcolor setdecpars setdec2pars s
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S spincad Run SpinCAD program (C) s
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S Description: Saves a copy of the
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S See also: NMR Spectroscopy User G
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S sd2 Applicability: Description: S
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S Examples: See also: • 'f1f3', '
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S Arguments: Examples: See also: se
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S See also: initialization, etc.).
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S See also: User Programming Relate
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S See also: Pulsed Field Gradient M
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S Arguments: Examples: Syntax 5 eje
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S Step Value Parameter setting Argu
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S sw rof2 Spectral width in directl
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S sw tpwr Spectral width in directl
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S Arguments: Examples: See also: re
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S See also: flushing mode. In the l
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S Examples: See also: trev time rev
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S See also: (e.g.: multiselective)
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S See also: and radial shims x1, y1
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S Arguments: See also: shift sets t
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S testsn testct Test signal-to-nois
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S spadd Syntax: Description: Argume
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S See also: If the spinning speed i
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S dsp initialize_iterate iterate ni
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S sqdir sqname studyid Svfname Stud
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S ss Steady-state transients (P) De
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S ssfilter sslsfrq ssntaps wft Full
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S shim wshim Submit an Autoshim exp
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S See also: sub('new') sub('trace',
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S Examples: See also: where numgray
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S Percent sign (%) substitution spe
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S Examples: See also: The svs comma
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S See also: variable evolution time
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T tpwrm Observe transmitter linear
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T Arguments: Examples: See also: 2D
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T Arguments: Examples: See also: 1
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T Syntax: Values: status of the cur
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T textis Syntax: Description: Argum
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T nt sw1 sw2 Number of transients (
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T tnroesy Description: See also: Se
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T tpwr tpwrm Observe transmitter po
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T Examples: See also: the 1 H, the
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T tupwr Description: See also: Tran
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U See also: NMR Spectroscopy User G
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U See also: NMR Spectroscopy User G
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U 608 Command and Parameter Referen
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V vast1d Applicability: Description
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V vf Description: Values: See also:
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V Examples: See also: Changing sele
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V See also: vnmr2sc('gcosy',2,3) nt
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V Examples: See also: file is the n
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V See also: NMR Spectroscopy User G
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V See also: NMR Spectroscopy User G
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V See also: VnmrJ Installation and
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W wp wp1 wp2 write writefid writepa
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W Values: Width, in mm. See also: N
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W wet Description: Flag to turn on
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W Examples: See also: before each o
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W Description: Arguments: See also:
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W See also: NMR Spectroscopy User G
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W wp2 Description: See also: Width
Page 643 and 644:
W writefid Syntax: Description: Arg
Page 645 and 646:
W See also: 'e' or 'exp' sets that
Page 647 and 648:
W Arguments: Examples: See also:
Page 649 and 650:
W 646 Command and Parameter Referen
Page 651 and 652:
X xpolar1 xy xz xz2 Set up paramete
Page 653 and 654:
X xmaddreq Applicability: Descripti
Page 655 and 656:
X Description: See also: Find the n
Page 657 and 658:
X Description: See also: A macro th
Page 659 and 660:
X Description: See also: Sets up th
Page 661 and 662:
Y Values: See also: If shimset is 1
Page 663 and 664:
Z Arguments: Examples: See also: be
Page 665 and 666:
Z See also: NMR Spectroscopy User G
Page 667 and 668:
Z See also: NMR Spectroscopy User G
Page 669 and 670:
Z 666 Command and Parameter Referen
Page 671 and 672:
Index type of data processing, 447
Page 673 and 674:
Index analysis of DEPT data, 70 car
Page 675 and 676:
Index parameters in a parameter tre
Page 677 and 678:
Index contour plot, 130 contour plo
Page 679 and 680:
Index FDM program, running, 219 FID
Page 681 and 682:
Index gradient calibration pulse se
Page 683 and 684:
Index linear modulator power, 179,
Page 685 and 686:
Index Oxford-Sorenson VT controller
Page 687 and 688:
Index Hewlett-Packard, 648 maximum
Page 689 and 690:
Index recording keyboard entries, 4
Page 691 and 692:
Index create parameters, 401 filter
Page 693 and 694:
Index t 2 dimension in, 343 tablib
Page 695:
Index WETPWXCAL pulse sequence, 631
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VnmrJ Command and Parameter Reference VnmrJ 2.2D

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