VnmrJ Command and Parameter Reference VnmrJ 2.2D

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fiddle2d Perform 2D reference deconvolution (C) ....................................... 222 fiddle2D Perform 2D reference deconvolution (C) ....................................... 222 fiddle2dd 2D reference deconvolution subtracting alternate FIDs (C)........... 222 fiddle2Dd 2D reference deconvolution subtracting alternate FIDs (C)........... 222 fidmax Find the maximum point in an FID (C) .......................................... 222 fidpar Add parameters for FID display in current experiment (M)........... 223 fidsave Save data (M).................................................................................. 223 fifolpsize FIFO loop size (P)........................................................................... 223 file File name of parameter set (P)........................................................ 223 files Interactively handle files (C) .......................................................... 223 filesinfo Return file information for files display (C)................................... 224 filtfile File of FIR digital filter coefficients (P) ......................................... 224 findxmlmenu Find an xml menu (M)................................................................... 225 fitspec Perform spectrum deconvolution (C, U)......................................... 225 fixgrd Convert gauss/cm value to DAC (M) ............................................. 226 fixpar Correct parameter characteristics in experiment (M) ..................... 226 fixpar3rf Create parameters for third rf channel (M)..................................... 226 fixpar4rf Create parameters for fourth rf channel (M)................................... 226 fixpar5rf Create parameters for fifth rf channel (M)...................................... 227 fixup Adjust parameter values selected by setup macros (M) ................. 227 fixpsg Update psg libraries (M) ................................................................. 227 flashc Convert compressed 2D data to standard 2D format (C)................ 227 flipflop Set up parameters for FLIPFLOP pulse sequence (M)................... 228 Fluorine Set up parameters for 19F experiment (M)..................................... 228 flush Write out data in memory (C)......................................................... 228 fn Fourier number in directly detected dimension (P) ........................ 229 fn1 Fourier number in 1st indirectly detected dimension (P) ............... 229 fn2 Fourier number in 2nd indirectly detected dimension (P) .............. 229 fn2D Fourier number to build up 2D DOSY display in freq. domain (P) 229 focus Send keyboard focus to input window (C) ..................................... 230 foldcc Fold INADEQUATE data about two-quantum axis (C)................. 230 foldj Fold J-resolved 2D spectrum about f 1 =0 axis (C) .......................... 230 foldt Fold COSY-like spectrum along diagonal axis (C) ........................ 230 fontselect Open FontSelect window (C) ......................................................... 231 format Format a real number or convert a string for output (C) ................ 231 fp Find peak heights or phases (C)...................................................... 232 fpmult First point multiplier for np FID data (P) ....................................... 232 fpmult1 First point multiplier for ni interferogram data (P)......................... 233 fpmult2 First point multiplier for ni2 interferogram data (P)....................... 233 fr Full recall of a display parameter set (M)....................................... 233 fread Read parameters from file and load them into a tree (C)................ 233 fsave Save parameters from a tree to a file (C) ........................................ 234 fsq Frequency-shifted quadrature detection (P).................................... 234 ft Fourier transform 1D data (C) ........................................................ 235 ft1d Fourier transform along f 2 dimension (C) ...................................... 236 ft1da Fourier transform phase-sensitive data (M).................................... 237 ft1dac Combine arrayed 2D FID matrices (M).......................................... 238 ft2d Fourier transform 2D data (C) ........................................................ 238 ft2da Fourier transform phase-sensitive data (M).................................... 241 ft2dac Combine arrayed 2D FID matrices (M).......................................... 242 ft3d Perform a 3D Fourier transform on a 3D FID data set (M,U) ........ 242 full Set display limits for a full screen (C) ............................................ 246 fullsq Display largest square 2D display (M) ........................................... 246 fullt Set display limits for a full screen with room for traces (C)........... 246 G g2pul_ecc Setup macro for eddy current compensation parameters (M)......... 248 ga Submit experiment to acquisition and FT the result (M)................ 249 gain Receiver gain (P) ............................................................................ 249 gap Find gap in the current spectrum (M) ............................................. 250 gaussian Set up unshifted Gaussian window function (M) ........................... 250 01-999380-00 A 0808 Command and Parameter Reference for VnmrJ 2.2D 11
gcal Gradient calibration constant (P) .................................................... 251 gcoil Current gradient coil (P) ................................................................. 251 Gcosy Convert the parameter to a gradient COSY experiment (M).......... 252 gdiff Diffusion gradient level (P) ............................................................ 252 Gdqcosy Convert the parameter to a gradient DQCOSY experiment (M) .... 252 get1d Select a 1D experiment for processing (M) .................................... 252 get2d Select a 2D experiment for processing (M) .................................... 253 getdim Return dimensionality of experiment (M) ...................................... 253 getfile Get information about directories and files (C) .............................. 253 getlimit get the limits of a variable in a tree (C) .......................................... 254 getll Get intensity and line frequency of line (C) ................................... 254 getparam Retrieve parameter from probe file (M) ......................................... 255 getplane Extract planes from a 3D spectral data set (M) .............................. 255 getreg Get frequency limits of a specified region (C) ............................... 256 getsn Get signal-to-noise estimate of a spectrum (M).............................. 256 gettoken Utility macro to separate a string into tokens (M) .......................... 257 gettxt Get text file from VnmrJ data file (C) ............................................ 257 gettype Get the type of a variable (C).......................................................... 257 getvalue Get value of parameter in a tree (C) ............................................... 258 gf Prepare parameters for FID/spectrum display in acqi (M) ............. 258 gf Gaussian function in directly detected dimension (P) .................... 259 gf1 Gaussian function in 1st indirectly detected dimension (P) ........... 259 gf2 Gaussian function in 2nd indirectly detected dimension (P) .......... 259 gflow Flow encoding gradient level (P).................................................... 259 gfs Gaussian shift const. in directly detected dimension (P) ................ 259 gfs1 Gaussian shift const. in 1st indirectly detected dimension (P) ....... 260 gfs2 Gaussian shift const. in 2nd indirectly detected dimension (P)...... 260 Ghmbc Convert the parameter to a gradient HMBC experiment (M)......... 260 ghmqc Set up a PFG HMQC pulse sequence (M)...................................... 260 Ghmqc Convert the parameter to a gradient HMQC experiment (M) ........ 260 gHMQC15 Set up parameters for 15 N gHMQC experiment (M)...................... 261 gHMQC_d2 Set up parameters for 15 N gHMQC experiment using dec. 2 (M).. 261 gHMQC_d213 Set up parameters for 13 C gHMQC experiment using dec. 2 (M).. 261 ghmqcps Set up a PFG HMQC phase-sensitive pulse sequence (M) ............ 261 ghsqc Set up a PFG HSQC pulse sequence (M) ....................................... 261 Ghsqc Convert the parameter to a gradient HSQC experiment (M).......... 261 gHSQC15 Set up parameters for 15 N gHSQC experiment (M) ....................... 261 gHSQC_d2 Set up parameters for 15 N gHSQC experiment using dec. 2 (M)... 261 gHSQC_d213 Set up parameters for 13 C gHSQC experiment using dec. 2 (M) ... 261 Ghsqctoxy Convert parameters for gradient HSQCTOXY experiment (M) .... 261 gilson Open the Gilson Liquid Handler window (C) ................................ 262 gin Return current mouse position and button values (C) .................... 262 globalauto Automation directory name (P) ...................................................... 262 glue Create a pseudo-2D dataset (M) ..................................................... 263 gmapshim Start gradient autoshimming (M).................................................... 263 gmapshim_au Start acquisition with gradient shimming (M)................................ 263 gmapspin Enable or disable spinning during gradient shimming (P) ............. 263 gmapsys Run gradient autoshimming, set parameters, map shims (M) ........ 264 gmapz Get parameters and files for gmapz pulse sequence (M)................ 265 gmap_findtof Gradient shimming flag to first find tof (P).................................... 265 gmap_z1z4 Gradient shimming flag to first shim z1-z4 (P) .............................. 265 gmax Maximum gradient strength (P)...................................................... 266 gmqcosy Set up PFG absolute-value MQF COSY parameter set (M)........... 266 gnoesy Set up a PFG NOESY parameter set (M) ....................................... 266 go Submit experiment to acquisition (M) ............................................ 266 go_ Pulse sequence setup macro called by go, ga, and au (M).............. 267 gpat–gpat3 Gradient shape (P) .......................................................................... 268 gplan Start interactive image planning (C)............................................... 268 gradientdisable Disable PFG gradients (P) .............................................................. 268 gradientshaping Activate shaping on the gradient pulses (P).................................... 268 gradstepsz Gradient step size (P)...................................................................... 268 gradtype Gradients for X, Y, and Z axes (P).................................................. 269 12 Command and Parameter Reference for VnmrJ 2.2D 01-999380-00 A 0808
Page 1 and 2: VnmrJ Command and Parameter Referen
Page 3 and 4: VnmrJ Command and Parameter Referen
Page 5 and 6: 2 Command and Parameter Reference f
Page 7 and 8: arraydim Dimension of experiment (P
Page 9 and 10: copy Copy a file (C) ..............
Page 11 and 12: dglc Display group of LC-NMR parame
Page 13: dsshn Display stacked spectra horiz
Page 17 and 18: homo3 Homodecoupling control for th
Page 19 and 20: loadcolors Load colors for graphics
Page 21 and 22: Noesy Convert the parameter to a NO
Page 23 and 24: plcosy Plot COSY- and NOESY-type sp
Page 25 and 26: R r Recall display parameter set (M
Page 27 and 28: seqfil Pulse sequence name (P).....
Page 29 and 30: sqsavestudy Macro to save study par
Page 31 and 32: updaterev Update after installing n
Page 33 and 34: xm1 Utility macro for study queue e
Page 35 and 36: 32 Command and Parameter Reference
Page 37 and 38: Notational Conventions md(to_exp) n
Page 39 and 40: A aph aph0 aphb aphx appdirs appmod
Page 41 and 42: A See also: parent (nested) macros
Page 43 and 44: A acosy Syntax: Description: See al
Page 45 and 46: A spin sw vp vs wp Sample spin rate
Page 47 and 48: A window should open automatically
Page 49 and 50: A See also: 595. Sample failed to i
Page 51 and 52: A spadd sub Add current spectrum to
Page 53 and 54: A Examples: See also: • 'ss' spec
Page 55 and 56: A Examples: See also: adept adept('
Page 57 and 58: A lock sample Submit an Autolock ex
Page 59 and 60: A Arguments: (3) Line containing an
Page 61 and 62: A See also: VnmrJ User Programming
Page 63 and 64: A appmode Description: Values: Appl
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A asin Find arc sine of number (C)
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A Arguments: Examples: When called
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A go_ load loc lock method sample s
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A Aufindz0 Automatic adjustment of
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A Values: 'y' indicates automation
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A Description: Arguments: Examples:
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A Examples: Examples: See also: >9
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A See also: NMR Spectroscopy User G
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A Examples: See also: number_argume
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A dscale pscale Display scale below
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B Arguments: Examples: See also: me
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B This command should rarely be use
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B See also: NMR Spectroscopy User G
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B 88 Command and Parameter Referenc
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C contact_time MAS cross-polarizati
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C Description: See also: Calculates
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C See also: 127 for imaging attenua
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C See also: NMR Spectroscopy User G
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C Description: checkstring is used
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C clfreq Description: See also: Cal
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C it runs in interactive mode; if n
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C Arguments: Examples: See also:
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C Description: Arguments: See also:
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C Examples: See also: • -dxxx, wh
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C Dqcosy relayh Set up parameters f
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C Related: apptype Application type
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C cr2 Description: See also: Cursor
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C crl Description: See also: Clear
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C See also: NMR Spectroscopy User G
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C 120 Command and Parameter Referen
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D delta Cursor difference in direct
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D dosygamma dosytimecubed dot1 dotf
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D See also: If d0='n', the software
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D daslp Description: Values: See al
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D dc Description: See also: Calcula
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D Arguments: Examples: See also: ds
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D ft2d imconi wft2d Fourier transfo
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D Syntax: Description: ddrcr= Sets
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D dm2 dm3 Decoupler mode for second
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D Description: Arguments: Examples:
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D deptproc Description: See also: P
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D dfid Syntax: Description: See als
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D ho plfid pfww sc vo vpf wc Horizo
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D Arguments: Examples: See also: te
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D See also: NMR Spectroscopy User G
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D Examples: in these directories. T
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D nli z Find integral values (C) Ad
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D Values: See also: 5 Hz to 2 MHz i
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D Description: Arguments: Examples:
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D See also: outside of the acqi pro
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D dnode Applicability: Description:
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D Examples: See also: max_width is
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D Values: See also: deltaf (if the
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D See also: dpf('top','noll') dpf('
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D dplane Syntax: Description: Argum
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D Arguments: See also: The pulse pa
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D CAUTION: See also: Decoupling pow
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D Examples: See also: • 'xor','no
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D ds Syntax: Description: Arguments
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D Examples: See also: ds2dn ds2dn('
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D dseq4 Applicability: Description:
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D Values: See also: the digital fil
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D dsp Applicability: Description: V
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D Arguments: Examples: See also: Th
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D step is the increment for the spe
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D dsww ft1d ho intmod pl plww sc sc
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D dsvast2d Display VAST data in a p
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D homorof3 tn Delay between setting
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E See also: NMR Spectroscopy User G
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E enter Applicability: Syntax: Desc
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E ewrite Applicability: Syntax: Des
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E keyword 'maclib' 'command' 'ascii
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E exit Description: CAUTION: Call t
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E Arguments: Examples: See also: (3
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E Syntax: Description: Arguments: E
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F foldcc foldj foldt fontselect for
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F make3dcoef par2d Make 3D coeffici
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F Examples: See also: v1, v2... is
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F fiddleu Perform reference deconvo
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F Arguments: Examples: See also: st
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F slfreq sp usemark wp Measured lin
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F Arguments: Examples: See also: nf
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F focus Description: See also: Send
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F See also: format($snum,3,1):$rval
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F Examples: See also: type of tree
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F Examples: See also: start is the
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F See also: NMR Spectroscopy User G
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F • 'noop' is a keyword to not pe
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F See also: • 'ni2' is a keyword
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F Arguments: ft3d Entered from UNIX
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F make3dcoef ptspec3d set3dproc spe
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G gHSQC_d213 Ghsqctoxy gilson gin g
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G examined for signal level. If the
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G See also: Be aware that if an old
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G Examples: See also: extension is
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G Examples: See also: • 'xall' is
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G Arguments: Examples: See also: A
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G See also: detected dimension. Thi
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G gilson Syntax: Description: See a
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G Values: 'n' disable spinning duri
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G gmax Description: See also: Maxim
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G go seqfil usergo Submit experimen
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G grayctr Gray level window adjustm
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G gtnroesy Applicability: Descripti
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G 274 Command and Parameter Referen
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H homo2 homo3 homo4 HOMODEC homo2d
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H See also: j2r is the reduced coup
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H Examples: See also: hcdept hcdept
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H homo homorof1 homorof2 homorof3 t
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H Examples: See also: hdwshimlist='
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H HMQC_d2 Description: Set up param
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H Related: dm3 Decoupler mode for t
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hoult Set parameters alfa and rof2
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H hsqctoxySE Description: Set up pa
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H htss1 Description: Values: See al
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H 296 Command and Parameter Referen
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I ihwinfo Syntax: Description: Argu
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I Examples: See also: dir_flag imag
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I See also: fn. The insref paramete
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I See also: NMR Spectroscopy User G
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I category type gettype returns str
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I 308 Command and Parameter Referen
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J Arguments: Examples: See also: ex
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J jviewports Viewport layout (P) De
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K See also: NMR Spectroscopy User G
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K 316 Command and Parameter Referen
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L lp1 lp2 lpalg lpalg1 lpalg2 lpext
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L Values: See also: A positive valu
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L legrelay Description: Values: See
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L See also: in Hz, analogous to sfr
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L Examples: See also: • 'comment'
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L Examples: See also: ln(.5) ln(val
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L Values: See also: 1, 2, 3, or 4 (
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L See also: User Guide: Solid-State
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L See also: lookup('delimiter',' ,\
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L strtlp strtext Starting point for
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L lpfilt ni LP coefficients to calc
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L lpprint Description: Values: See
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L Arguments: Examples: directory is
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L lsfrq1 Description: Values: Frequ
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L 346 Command and Parameter Referen
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M movetof mp mqcosy mrev8 mrfb mref
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M Arguments: Examples: See also: ov
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M make3dcoef Syntax: Description: A
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M element_number and format argumen
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M Description: Arguments: (5) mark
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M Values: See also: Note that the V
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M mf Syntax: Description: Arguments
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M mfopen mftrace rfblk rftrace Memo
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M mlabel Description: See also: Men
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M Examples: See also: mp(4) mp(2,3)
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M Description: Examples: An array o
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M CAUTION: See also: One special ca
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N newmenu Syntax: Description: Argu
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N ni3 Description: See also: Number
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N Arguments: Examples: See also: 'p
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N r6 returns the percentage channel
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N ntrig Applicability: Description:
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N 382 Command and Parameter Referen
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O Arguments: Examples: See also: %d
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O paros sw Create additional parame
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O 'n' causes normal acquisition to
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P pboxpar pboxrst pboxunits pcon pc
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P prescan_CoilTable prescan_tn prin
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P Description: Values: See also: Sp
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P See also: The pa1 command is only
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P page Description: Name of page (P
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P Description: See also: Creates th
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P See also: The quality of filterin
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P See also: User Programming Relate
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P See also: NMR Spectroscopy User G
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P pboxpar Syntax: Description: Argu
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P See also: User Programming Relate
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P Values: See also: A three-charact
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P Examples: See also: reference_reg
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P phase Syntax: Description: Argume
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P phfid1 Description: Values: See a
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P pintvast Applicability: Syntax: D
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P ft1d ho intmod plww pshr pslw sc
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P plate_glue Applicability: Descrip
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P vpf wc Current vertical position
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P • Negative or positive contours
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P Related: protune Macro to start P
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P plothiresprep High resolution plo
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P p1 pw First pulse width (P) Pulse
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P Examples: See also: pprofile ppro
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P Examples: str is a string that ca
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P See also: VnmrJ User Programming
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P See also: proc1d does not work wi
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P Description: Arguments: Examples:
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P Third case: exec — keyword that
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P Examples: See also: C3 sets lb1=-
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P See also: searched for when an ex
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P sw sw1 sw2 Spectral width in dire
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P See also: point are used in the s
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P Arguments: Examples: See also: fi
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P 466 Command and Parameter Referen
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Q ? Display the value of an individ
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R rfband rfblk rfchannel rfchtype r
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R See also: experiment with the rt
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R Examples: The par1 and par2 param
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R Examples: See also: readhw('z1c',
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R Description: Produces 2D images (
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R record Syntax: Description: Argum
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R Related: reff1 Reference f2 Indir
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R See also: if it is a heteronuclea
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R the current tree, if it exists th
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R vnmrjcmd() wp Commands to invoke
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R Arguments: Examples: See also: us
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R Values: See also: The values of r
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R rfp Description: Values: See also
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R rfwg Description: Values: See als
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R rl rl2 scalesw1 sfrq Set ref. lin
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R See also: NMR Spectroscopy User G
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R See also: NMR Spectroscopy User G
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R Examples: See also: noabort — k
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S setcolor setdecpars setdec2pars s
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S spincad Run SpinCAD program (C) s
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S Description: Saves a copy of the
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S See also: NMR Spectroscopy User G
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S sd2 Applicability: Description: S
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S Examples: See also: • 'f1f3', '
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S Arguments: Examples: See also: se
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S See also: initialization, etc.).
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S See also: User Programming Relate
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S See also: Pulsed Field Gradient M
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S Arguments: Examples: Syntax 5 eje
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S Step Value Parameter setting Argu
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S sw rof2 Spectral width in directl
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S sw tpwr Spectral width in directl
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S Arguments: Examples: See also: re
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S See also: flushing mode. In the l
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S Examples: See also: trev time rev
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S See also: (e.g.: multiselective)
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S See also: and radial shims x1, y1
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S Arguments: See also: shift sets t
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S testsn testct Test signal-to-nois
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S spadd Syntax: Description: Argume
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S See also: If the spinning speed i
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S dsp initialize_iterate iterate ni
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S sqdir sqname studyid Svfname Stud
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S ss Steady-state transients (P) De
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S ssfilter sslsfrq ssntaps wft Full
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S shim wshim Submit an Autoshim exp
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S See also: sub('new') sub('trace',
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S Examples: See also: where numgray
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S Percent sign (%) substitution spe
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S Examples: See also: The svs comma
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S See also: variable evolution time
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T tpwrm Observe transmitter linear
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T Arguments: Examples: See also: 2D
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T Arguments: Examples: See also: 1
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T Syntax: Values: status of the cur
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T textis Syntax: Description: Argum
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T nt sw1 sw2 Number of transients (
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T tnroesy Description: See also: Se
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T tpwr tpwrm Observe transmitter po
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T Examples: See also: the 1 H, the
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T tupwr Description: See also: Tran
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U See also: NMR Spectroscopy User G
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U See also: NMR Spectroscopy User G
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U 608 Command and Parameter Referen
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V vast1d Applicability: Description
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V vf Description: Values: See also:
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V Examples: See also: Changing sele
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V See also: vnmr2sc('gcosy',2,3) nt
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V Examples: See also: file is the n
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V See also: NMR Spectroscopy User G
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V See also: NMR Spectroscopy User G
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V See also: VnmrJ Installation and
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W wp wp1 wp2 write writefid writepa
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W Values: Width, in mm. See also: N
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W wet Description: Flag to turn on
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W Examples: See also: before each o
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W Description: Arguments: See also:
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W See also: NMR Spectroscopy User G
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W wp2 Description: See also: Width
Page 643 and 644:
W writefid Syntax: Description: Arg
Page 645 and 646:
W See also: 'e' or 'exp' sets that
Page 647 and 648:
W Arguments: Examples: See also:
Page 649 and 650:
W 646 Command and Parameter Referen
Page 651 and 652:
X xpolar1 xy xz xz2 Set up paramete
Page 653 and 654:
X xmaddreq Applicability: Descripti
Page 655 and 656:
X Description: See also: Find the n
Page 657 and 658:
X Description: See also: A macro th
Page 659 and 660:
X Description: See also: Sets up th
Page 661 and 662:
Y Values: See also: If shimset is 1
Page 663 and 664:
Z Arguments: Examples: See also: be
Page 665 and 666:
Z See also: NMR Spectroscopy User G
Page 667 and 668:
Z See also: NMR Spectroscopy User G
Page 669 and 670:
Z 666 Command and Parameter Referen
Page 671 and 672:
Index type of data processing, 447
Page 673 and 674:
Index analysis of DEPT data, 70 car
Page 675 and 676:
Index parameters in a parameter tre
Page 677 and 678:
Index contour plot, 130 contour plo
Page 679 and 680:
Index FDM program, running, 219 FID
Page 681 and 682:
Index gradient calibration pulse se
Page 683 and 684:
Index linear modulator power, 179,
Page 685 and 686:
Index Oxford-Sorenson VT controller
Page 687 and 688:
Index Hewlett-Packard, 648 maximum
Page 689 and 690:
Index recording keyboard entries, 4
Page 691 and 692:
Index create parameters, 401 filter
Page 693 and 694:
Index t 2 dimension in, 343 tablib
Page 695:
Index WETPWXCAL pulse sequence, 631
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VnmrJ Command and Parameter Reference VnmrJ 2.2D

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