VnmrJ Command and Parameter Reference VnmrJ 2.2D

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A A aa abort abortallacqs abortoff aborton abs AC1S-AC11S ACbackup acct ACreport acos acosy acosyold acqdisp acqi acqmeter Acqmeter acqmode acqstat Acqstat acqstatus acquire actionid activestudy add addi addnucleus addpar addparams addprobe adept aexppl ai aig alfa alock ampmode amptype analyz analyze ap ap apa Abort acquisition with error (C) Terminate action of calling macro and all higher macros (C) Reset acquisition computer in a drastic situation (C) Terminate normal functioning of abort in a macro (C) Restore normal functioning of abort in a macro (C) Find absolute value of a number (C) Autocalibration macros (M) Make backup copy of current probe file (M) Writes records for operator login and logoff (M) Print copy of probe file after autocalibration (M) Find arc cosine of number (C) Automatic analysis of COSY data (C) Automatic analysis of COSY data, old algorithm (C) Display message on the acquisition status line (C) Interactive acquisition display process (C) Open Acqmeter window (M) Open Acqmeter window (U) Acquisition mode (P) Open Acquisition Status window (M) Open Acquisition Status window (U) Acquisition status (P) Acquire data (M) Current study queue node id (P) Active study name (P) Add current FID to add/subtract experiment (C) Start interactive add/subtract mode (C) Add new nucleus to existing probe file (M) Add selected parameters to current experiment (M) Add parameter to current probe file (M) Create new probe directory and probe file (M) Automatic DEPT analysis and spectrum editing (C) Automatic plot of spectral expansion (M) Select absolute-intensity mode (C) Absolute-intensity group (P) Set alfa delay before acquisition (P) Automatic lock control (P) Independent control of amplifier mode (P) Amplifier type (P) Calculate standard peak height (M) Generalized curve fitting (C) Print out “all” parameters (C) “All” parameters display control (P) Plot parameters automatically (M) 01-999380-00 A 0808 Command and Parameter Reference for VnmrJ 2.2D 35
A aph aph0 aphb aphx appdirs appmode apptype Apt aptaph array array arraydim asin asize assign at atan atan2 atcmd atext attval atune au AuCALch3i AuCALch3i1 AuCALch3oh AuCALch3oh1 Aucalibz0 AuCdec AuCgrad AuCobs audiofilter Aufindz0 Augcal Augmap Augmapz0 AuHdec AuHobs Aumakegmap AuNuc auto auto auto_au Autobackup autodept autodir autogo Automatic phase adjustment of spectra (C) Automatic phase of zero-order term (C) Auto phasing for Bruker data (C) Perform optimized automatic phasing (M) Starts Applications Directory Editor (M) Application mode (P) Application type (P) Set up parameters for APT experiment (M) Automatic processing for APT spectra (M) Easy entry of linearly spaced array values (M) Parameter order and precedence (P) Dimension of experiment (P) Find arc sine of number (C) Make plot resolution along f 1 and f 2 the same (M) Assign transitions to experimental lines (M) Acquisition time (P) Find arc tangent of a number (C) Find arc tangent of two numbers (C) Call a macro at a specified time (M) Append string to current experiment text file (M) Calculate pulse width (M) ProTune Present (P) Submit experiment to acquisition and process data (M) Set up autocalibration with CH3I sample (M) Get autocalibration with CH 3 I sample (M) Set up autocalibration with Autotest sample (M) Get autocalibration with Autotest sample (M) Automatic Hz to DAC calibration for Z0 (M) Carbon decoupler calibration macro (M) Carbon/proton gradient ratio calibration macro (M) Carbon observe calibration macro (M) Audio filter board type (P) Automatic adjustment of Z0 (M) Probe gcal calibration macro (M) Automated gradient map generation (M) Automatic lock gradient map generation and z0 calibration (M) Proton decoupler calibration (M) Proton observe calibration macro (M) Auto lock gradient map generation (M) Get parameters for a given nucleus (M) Prepare for an automation run (C) Automation mode active (P) Controlling macro for automation (M) Back up current probe file (M) Automated complete analysis of DEPT data (M) Automation directory absolute path (P) Start automation run (C) 36 Command and Parameter Reference for VnmrJ 2.2D 01-999380-00 A 0808
Page 1 and 2: VnmrJ Command and Parameter Referen
Page 3 and 4: VnmrJ Command and Parameter Referen
Page 5 and 6: 2 Command and Parameter Reference f
Page 7 and 8: arraydim Dimension of experiment (P
Page 9 and 10: copy Copy a file (C) ..............
Page 11 and 12: dglc Display group of LC-NMR parame
Page 13 and 14: dsshn Display stacked spectra horiz
Page 15 and 16: gcal Gradient calibration constant
Page 17 and 18: homo3 Homodecoupling control for th
Page 19 and 20: loadcolors Load colors for graphics
Page 21 and 22: Noesy Convert the parameter to a NO
Page 23 and 24: plcosy Plot COSY- and NOESY-type sp
Page 25 and 26: R r Recall display parameter set (M
Page 27 and 28: seqfil Pulse sequence name (P).....
Page 29 and 30: sqsavestudy Macro to save study par
Page 31 and 32: updaterev Update after installing n
Page 33 and 34: xm1 Utility macro for study queue e
Page 35 and 36: 32 Command and Parameter Reference
Page 37: Notational Conventions md(to_exp) n
Page 41 and 42: A See also: parent (nested) macros
Page 43 and 44: A acosy Syntax: Description: See al
Page 45 and 46: A spin sw vp vs wp Sample spin rate
Page 47 and 48: A window should open automatically
Page 49 and 50: A See also: 595. Sample failed to i
Page 51 and 52: A spadd sub Add current spectrum to
Page 53 and 54: A Examples: See also: • 'ss' spec
Page 55 and 56: A Examples: See also: adept adept('
Page 57 and 58: A lock sample Submit an Autolock ex
Page 59 and 60: A Arguments: (3) Line containing an
Page 61 and 62: A See also: VnmrJ User Programming
Page 63 and 64: A appmode Description: Values: Appl
Page 65 and 66: A asin Find arc sine of number (C)
Page 67 and 68: A Arguments: Examples: When called
Page 69 and 70: A go_ load loc lock method sample s
Page 71 and 72: A Aufindz0 Automatic adjustment of
Page 73 and 74: A Values: 'y' indicates automation
Page 75 and 76: A Description: Arguments: Examples:
Page 77 and 78: A Examples: Examples: See also: >9
Page 79 and 80: A See also: NMR Spectroscopy User G
Page 81 and 82: A Examples: See also: number_argume
Page 83 and 84: A dscale pscale Display scale below
Page 85 and 86: B Arguments: Examples: See also: me
Page 87 and 88: B This command should rarely be use
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B See also: NMR Spectroscopy User G
Page 91 and 92:
B 88 Command and Parameter Referenc
Page 93 and 94:
C contact_time MAS cross-polarizati
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C Description: See also: Calculates
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C See also: 127 for imaging attenua
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C See also: NMR Spectroscopy User G
Page 101 and 102:
C Description: checkstring is used
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C clfreq Description: See also: Cal
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C it runs in interactive mode; if n
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C Arguments: Examples: See also:
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C Description: Arguments: See also:
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C Examples: See also: • -dxxx, wh
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C Dqcosy relayh Set up parameters f
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C Related: apptype Application type
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C cr2 Description: See also: Cursor
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C crl Description: See also: Clear
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C See also: NMR Spectroscopy User G
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C 120 Command and Parameter Referen
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D delta Cursor difference in direct
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D dosygamma dosytimecubed dot1 dotf
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D See also: If d0='n', the software
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D daslp Description: Values: See al
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D dc Description: See also: Calcula
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D Arguments: Examples: See also: ds
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D ft2d imconi wft2d Fourier transfo
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D Syntax: Description: ddrcr= Sets
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D dm2 dm3 Decoupler mode for second
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D Description: Arguments: Examples:
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D deptproc Description: See also: P
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D dfid Syntax: Description: See als
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D ho plfid pfww sc vo vpf wc Horizo
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D Arguments: Examples: See also: te
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D See also: NMR Spectroscopy User G
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D Examples: in these directories. T
Page 157 and 158:
Page 159 and 160:
D nli z Find integral values (C) Ad
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D Values: See also: 5 Hz to 2 MHz i
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D Description: Arguments: Examples:
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D See also: outside of the acqi pro
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D dnode Applicability: Description:
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D Examples: See also: max_width is
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D Values: See also: deltaf (if the
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D See also: dpf('top','noll') dpf('
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D dplane Syntax: Description: Argum
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D Arguments: See also: The pulse pa
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D CAUTION: See also: Decoupling pow
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D Examples: See also: • 'xor','no
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D ds Syntax: Description: Arguments
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D Examples: See also: ds2dn ds2dn('
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D dseq4 Applicability: Description:
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D Values: See also: the digital fil
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D dsp Applicability: Description: V
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D Arguments: Examples: See also: Th
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D step is the increment for the spe
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D dsww ft1d ho intmod pl plww sc sc
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D dsvast2d Display VAST data in a p
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D homorof3 tn Delay between setting
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E See also: NMR Spectroscopy User G
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E enter Applicability: Syntax: Desc
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E ewrite Applicability: Syntax: Des
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E keyword 'maclib' 'command' 'ascii
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E exit Description: CAUTION: Call t
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E Arguments: Examples: See also: (3
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E Syntax: Description: Arguments: E
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F foldcc foldj foldt fontselect for
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F make3dcoef par2d Make 3D coeffici
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F Examples: See also: v1, v2... is
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F fiddleu Perform reference deconvo
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F Arguments: Examples: See also: st
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F slfreq sp usemark wp Measured lin
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F Arguments: Examples: See also: nf
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F focus Description: See also: Send
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F See also: format($snum,3,1):$rval
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F Examples: See also: type of tree
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F Examples: See also: start is the
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F See also: NMR Spectroscopy User G
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F • 'noop' is a keyword to not pe
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F See also: • 'ni2' is a keyword
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F Arguments: ft3d Entered from UNIX
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F make3dcoef ptspec3d set3dproc spe
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G gHSQC_d213 Ghsqctoxy gilson gin g
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G examined for signal level. If the
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G See also: Be aware that if an old
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G Examples: See also: extension is
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G Examples: See also: • 'xall' is
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G Arguments: Examples: See also: A
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G See also: detected dimension. Thi
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G gilson Syntax: Description: See a
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G Values: 'n' disable spinning duri
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G gmax Description: See also: Maxim
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G go seqfil usergo Submit experimen
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G grayctr Gray level window adjustm
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G gtnroesy Applicability: Descripti
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G 274 Command and Parameter Referen
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H homo2 homo3 homo4 HOMODEC homo2d
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H See also: j2r is the reduced coup
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H Examples: See also: hcdept hcdept
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H homo homorof1 homorof2 homorof3 t
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H Examples: See also: hdwshimlist='
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H HMQC_d2 Description: Set up param
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H Related: dm3 Decoupler mode for t
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hoult Set parameters alfa and rof2
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H hsqctoxySE Description: Set up pa
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H htss1 Description: Values: See al
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H 296 Command and Parameter Referen
Page 301 and 302:
I ihwinfo Syntax: Description: Argu
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I Examples: See also: dir_flag imag
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I See also: fn. The insref paramete
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I See also: NMR Spectroscopy User G
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I category type gettype returns str
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I 308 Command and Parameter Referen
Page 313 and 314:
J Arguments: Examples: See also: ex
Page 315 and 316:
J jviewports Viewport layout (P) De
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K See also: NMR Spectroscopy User G
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K 316 Command and Parameter Referen
Page 321 and 322:
L lp1 lp2 lpalg lpalg1 lpalg2 lpext
Page 323 and 324:
L Values: See also: A positive valu
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L legrelay Description: Values: See
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L See also: in Hz, analogous to sfr
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L Examples: See also: • 'comment'
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L Examples: See also: ln(.5) ln(val
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L Values: See also: 1, 2, 3, or 4 (
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L See also: User Guide: Solid-State
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L See also: lookup('delimiter',' ,\
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L strtlp strtext Starting point for
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L lpfilt ni LP coefficients to calc
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L lpprint Description: Values: See
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L Arguments: Examples: directory is
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L lsfrq1 Description: Values: Frequ
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L 346 Command and Parameter Referen
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M movetof mp mqcosy mrev8 mrfb mref
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M Arguments: Examples: See also: ov
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M make3dcoef Syntax: Description: A
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M element_number and format argumen
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M Description: Arguments: (5) mark
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M Values: See also: Note that the V
Page 363 and 364:
M mf Syntax: Description: Arguments
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M mfopen mftrace rfblk rftrace Memo
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M mlabel Description: See also: Men
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M Examples: See also: mp(4) mp(2,3)
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M Description: Examples: An array o
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M CAUTION: See also: One special ca
Page 375 and 376:
N newmenu Syntax: Description: Argu
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N ni3 Description: See also: Number
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N Arguments: Examples: See also: 'p
Page 381 and 382:
N r6 returns the percentage channel
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N ntrig Applicability: Description:
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N 382 Command and Parameter Referen
Page 387 and 388:
O Arguments: Examples: See also: %d
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O paros sw Create additional parame
Page 391 and 392:
O 'n' causes normal acquisition to
Page 393 and 394:
P pboxpar pboxrst pboxunits pcon pc
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P prescan_CoilTable prescan_tn prin
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P Description: Values: See also: Sp
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P See also: The pa1 command is only
Page 401 and 402:
P page Description: Name of page (P
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P Description: See also: Creates th
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P See also: The quality of filterin
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P See also: User Programming Relate
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P See also: NMR Spectroscopy User G
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Page 413 and 414:
P pboxpar Syntax: Description: Argu
Page 415 and 416:
P See also: User Programming Relate
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P Values: See also: A three-charact
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P Examples: See also: reference_reg
Page 421 and 422:
P phase Syntax: Description: Argume
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P phfid1 Description: Values: See a
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P pintvast Applicability: Syntax: D
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P ft1d ho intmod plww pshr pslw sc
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P plate_glue Applicability: Descrip
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P vpf wc Current vertical position
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P • Negative or positive contours
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P Related: protune Macro to start P
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P plothiresprep High resolution plo
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Page 441 and 442:
Page 443 and 444:
P p1 pw First pulse width (P) Pulse
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P Examples: See also: pprofile ppro
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P Examples: str is a string that ca
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P See also: VnmrJ User Programming
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P See also: proc1d does not work wi
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P Description: Arguments: Examples:
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P Third case: exec — keyword that
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P Examples: See also: C3 sets lb1=-
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P See also: searched for when an ex
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P sw sw1 sw2 Spectral width in dire
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P See also: point are used in the s
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P Arguments: Examples: See also: fi
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P 466 Command and Parameter Referen
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Q ? Display the value of an individ
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R rfband rfblk rfchannel rfchtype r
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R See also: experiment with the rt
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R Examples: The par1 and par2 param
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R Examples: See also: readhw('z1c',
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R Description: Produces 2D images (
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R record Syntax: Description: Argum
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R Related: reff1 Reference f2 Indir
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R See also: if it is a heteronuclea
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R the current tree, if it exists th
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R vnmrjcmd() wp Commands to invoke
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R Arguments: Examples: See also: us
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R Values: See also: The values of r
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R rfp Description: Values: See also
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R rfwg Description: Values: See als
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R rl rl2 scalesw1 sfrq Set ref. lin
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R See also: NMR Spectroscopy User G
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R See also: NMR Spectroscopy User G
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R Examples: See also: noabort — k
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S setcolor setdecpars setdec2pars s
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S spincad Run SpinCAD program (C) s
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S Description: Saves a copy of the
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S See also: NMR Spectroscopy User G
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Page 519 and 520:
S sd2 Applicability: Description: S
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S Examples: See also: • 'f1f3', '
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S Arguments: Examples: See also: se
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S See also: initialization, etc.).
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S See also: User Programming Relate
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S See also: Pulsed Field Gradient M
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S Arguments: Examples: Syntax 5 eje
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S Step Value Parameter setting Argu
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S sw rof2 Spectral width in directl
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S sw tpwr Spectral width in directl
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S Arguments: Examples: See also: re
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S See also: flushing mode. In the l
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S Examples: See also: trev time rev
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S See also: (e.g.: multiselective)
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S See also: and radial shims x1, y1
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S Arguments: See also: shift sets t
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S testsn testct Test signal-to-nois
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S spadd Syntax: Description: Argume
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S See also: If the spinning speed i
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S dsp initialize_iterate iterate ni
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S sqdir sqname studyid Svfname Stud
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S ss Steady-state transients (P) De
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S ssfilter sslsfrq ssntaps wft Full
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S shim wshim Submit an Autoshim exp
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S See also: sub('new') sub('trace',
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S Examples: See also: where numgray
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S Percent sign (%) substitution spe
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S Examples: See also: The svs comma
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S See also: variable evolution time
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T tpwrm Observe transmitter linear
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T Arguments: Examples: See also: 2D
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T Arguments: Examples: See also: 1
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T Syntax: Values: status of the cur
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T textis Syntax: Description: Argum
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T nt sw1 sw2 Number of transients (
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T tnroesy Description: See also: Se
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T tpwr tpwrm Observe transmitter po
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T Examples: See also: the 1 H, the
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T tupwr Description: See also: Tran
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U See also: NMR Spectroscopy User G
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U See also: NMR Spectroscopy User G
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U 608 Command and Parameter Referen
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V vast1d Applicability: Description
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V vf Description: Values: See also:
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V Examples: See also: Changing sele
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V See also: vnmr2sc('gcosy',2,3) nt
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V Examples: See also: file is the n
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V See also: NMR Spectroscopy User G
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V See also: NMR Spectroscopy User G
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V See also: VnmrJ Installation and
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W wp wp1 wp2 write writefid writepa
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W Values: Width, in mm. See also: N
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W wet Description: Flag to turn on
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W Examples: See also: before each o
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W Description: Arguments: See also:
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W See also: NMR Spectroscopy User G
Page 641 and 642:
W wp2 Description: See also: Width
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W writefid Syntax: Description: Arg
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W See also: 'e' or 'exp' sets that
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W Arguments: Examples: See also:
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W 646 Command and Parameter Referen
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X xpolar1 xy xz xz2 Set up paramete
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X xmaddreq Applicability: Descripti
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X Description: See also: Find the n
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X Description: See also: A macro th
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X Description: See also: Sets up th
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Y Values: See also: If shimset is 1
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Z Arguments: Examples: See also: be
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Z See also: NMR Spectroscopy User G
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Z See also: NMR Spectroscopy User G
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Z 666 Command and Parameter Referen
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Index type of data processing, 447
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Index analysis of DEPT data, 70 car
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Index parameters in a parameter tre
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Index contour plot, 130 contour plo
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Index FDM program, running, 219 FID
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Index gradient calibration pulse se
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Index linear modulator power, 179,
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Index Oxford-Sorenson VT controller
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Index Hewlett-Packard, 648 maximum
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Index recording keyboard entries, 4
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Index create parameters, 401 filter
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Index t 2 dimension in, 343 tablib
Page 695:
Index WETPWXCAL pulse sequence, 631
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VnmrJ Command and Parameter Reference VnmrJ 2.2D

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