VnmrJ Command and Parameter Reference VnmrJ 2.2D

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wdone Specify action when experiment is done (P) ................................. 628 werr Specify action when error occurs (C) ............................................. 629 werr When error (P) ................................................................................ 629 wet Flag to turn on or off wet solvent suppression ((P) ........................ 630 Wet1d Set up parameters for wet 1 H experiment (M)................................ 630 wetdqcosy Set up parameters for a WETDQCOSY pulse sequence (M)......... 630 wetgcosy Set up parameters for a WETGCOSY pulse sequence (M)............ 630 wetghmqcps Set up parameters for a WETGHMQCPS pulse sequence (M) ...... 630 wetghsqc Set up parameters for a WETGHSQC pulse sequence (M)............ 630 wetgmqcosy Set up parameters for a WETGHSQC pulse sequence (M)............ 630 wetit Set up and create pulse shapes for Wet1d experiment (M)............ 630 wetnoesy Set up parameters for a WETNOESY pulse sequence (M) ............ 631 wetpeaks Number of peaks for wet solvent suppression (P) ......................... 631 wetpwxcal Set up parameters for a WETPWXCAL pulse sequence (M) ........ 631 wettntocsy Set up parameters for a WETTNTOCSY pulse sequence (M)....... 631 wetshape Shape for pwwet pulses (P) ............................................................ 631 wexp Specify action when experiment completes (C) ............................. 631 wexp When experiment completes (P)..................................................... 632 wf Width of FID (P)............................................................................. 632 wf1 Width of interferogram in 1st indirectly detected dimension (P) ... 633 wf2 Width of interferogram in 2nd indirectly detected dimension (P).. 633 wfgtest Waveform generator test (M).......................................................... 633 wft Weight and Fourier transform 1D data (C) ..................................... 633 wft1d Weight and Fourier transform f 2 for 2D data (C)............................ 633 wft1da Weight and Fourier transform phase-sensitive data (M)................. 634 wft1dac Combine arrayed 2D FID matrices (M).......................................... 634 wft2d Weight and Fourier transform 2D data (C) ..................................... 634 wft2da Weight and Fourier transform phase-sensitive data (M)................. 635 wft2dac Combine arrayed 2D FID matrices (M).......................................... 635 wftt3 Process f 3 dimension during 3D acquisition (M)............................ 636 which Display which command or macro is used (M).............................. 636 wnt Specify action when nt transients accumulate (C).......................... 636 wnt When number of transients (P) ....................................................... 637 wp Width of plot in directly detected dimension (P)............................ 637 wp1 Width of plot in 1st indirectly detected dimension (P) ................... 637 wp2 Width of plot in 2nd indirectly detected dimension (P).................. 638 write Write formatted text to a device (C) ............................................... 638 writefid Write numeric text file using a FID element (C) ............................ 640 writeparam Write one of more parameters to a file (C) ..................................... 640 writespectrum write a spectrum to a binary file (C) ............................................... 640 wrtp Command string executed after rtp command (P) .......................... 641 wsram Send hardware configuration to acquisition console (C)................ 641 wshim Conditions when shimming is performed (P)................................. 641 wtfile User-defined weighting in directly detected dimension (P) ........... 642 wtfile1 User-defined weighting in 1st indirectly detected dimension (P)... 642 wtfile2 User-defined weighting in 2nd indirectly detected dimension (P) . 642 wtgen Compile user-written weighting functions (M,U) .......................... 643 wti Interactive weighting (C) ................................................................ 643 wtia Interactive weighting for 2D absorptive data (M) .......................... 644 wtune Specify when to tune (P)................................................................. 644 wtunedone What to do after ProTune tuning is done (P) .................................. 645 wysiwyg Set plot display or full display (P) .................................................. 645 X x0 X-zero position of HP pen plotter or Postscript device (P) ............ 648 x1 X1 shim gradient (P)....................................................................... 648 x2y2 X2Y2 shim gradient (P).................................................................. 648 x3 X3 shim gradient (P)....................................................................... 648 x4 X4 shim gradient (P)....................................................................... 648 xdiag Threshold for excluding diagonal peaks when peak picking (P).... 649 xgate Load time counter (M).................................................................... 649 01-999380-00 A 0808 Command and Parameter Reference for VnmrJ 2.2D 29
xm1 Utility macro for study queue experiment manager (M) ............... 649 xmaction Perform study queue action (M) ..................................................... 649 xmactionw Perform study queue action for walkup (M)................................... 649 xmaddreq Add a required protocol before the main protocol (M) .................. 650 xmcheckreq Check required protocol name (M)................................................. 650 xmconvert Convert a temporarily stored study into a submitted study (M)..... 650 xmcopy Copy protocols in a study queue (M).............................................. 650 xmdelete Delete nodes in a study queue (M) ................................................. 650 xmenablepanel Enable or disable a parameter panel (M) ........................................ 650 xmendq End a chained study queue (M) ...................................................... 650 xmgetatts Get study queue attributes (M) ....................................................... 651 xmHprescan Set up and process Proton prescans (M)......................................... 651 xminit Initialize an imaging study queue (M)............................................ 651 xmlockup Move a study queue node up and lock it (M) ................................. 651 xmmakenode Make a new study queue node (M)................................................. 651 xmnext Find next prescan or next experiment in study queue (M) ............. 651 xmprescan Run prescans in study queue (M) ................................................... 652 xmreact Recover from error conditions during automation study (M)......... 652 xmreadnode Read attributes from a study queue node (M)................................. 652 xmrtpar Retrieve parameters from a study queue node (M)......................... 652 xmsample Write enterQ entry for a sample for study queue – liquids (M)...... 652 xmsara Write enterQ entry for a sample for study queue – imaging (M) ... 653 xmsatfrq Processing for Presat experiment (M) ............................................ 653 xmselect Action when study queue node is selected (M) .............................. 653 xmsetatts Set an attribute for a study queue node (M).................................... 653 xmsetattr Set an attribute for a study queue node (M).................................... 653 xmshowdata Show data from a study queue node (M)........................................ 653 xmstartnightq Start the night queue (M) ................................................................ 654 xmsubmit Submit sample(s) to the study queue (M)....................................... 654 xmtime Update the study queue time (M) ................................................... 654 xmtune Check tune parameter during automation (M)................................ 654 xmwerr Recover from acquisition error in study queue (M) ....................... 655 xmwexp Processing macro for end of acquisition in study queue (M) ......... 655 xmwritenode Write study queue node attributes (M) ........................................... 655 xmwritesq Write study queue node order (M).................................................. 655 xpol Cross-polarization (P) ..................................................................... 655 xpolar1 Set up parameters for XPOLAR1 pulse sequence (M)................... 655 xy XY shim gradient (P)...................................................................... 656 xz XZ shim gradient (P) ...................................................................... 656 xz2 XZ2 shim gradient (P) .................................................................... 656 Y y0 Y-zero position of HP pen plotter or Postscript device (P)............. 657 y1 Y1 shim gradient (P)....................................................................... 657 y3 Y3 shim gradient (P)....................................................................... 657 y4 Y4 shim gradient (P)....................................................................... 657 yz YZ shim gradient (P) ...................................................................... 657 yz2 YZ2 shim gradient (P) .................................................................... 658 Z z Add integral reset point at cursor position (C) ............................... 659 z0 Z0 field position (P)........................................................................ 660 z1 Z1 shim gradient (P) ....................................................................... 660 z1c Z1C shim gradient (P)..................................................................... 660 z2 Z2 shim gradient (P) ....................................................................... 660 z2c Z2C shim gradient (P)..................................................................... 661 z2x2y2 Z2X2Y2 shim gradient (P) ............................................................. 661 z2x3 Z2X3 shim gradient (P) .................................................................. 661 z2xy Z2XY shim gradient (P) ................................................................. 661 z2y3 Z2Y3 shim gradient (P) .................................................................. 661 z3 Z3 shim gradient (P) ....................................................................... 661 30 Command and Parameter Reference for VnmrJ 2.2D 01-999380-00 A 0808
Page 1 and 2: VnmrJ Command and Parameter Referen
Page 3 and 4: VnmrJ Command and Parameter Referen
Page 5 and 6: 2 Command and Parameter Reference f
Page 7 and 8: arraydim Dimension of experiment (P
Page 9 and 10: copy Copy a file (C) ..............
Page 11 and 12: dglc Display group of LC-NMR parame
Page 13 and 14: dsshn Display stacked spectra horiz
Page 15 and 16: gcal Gradient calibration constant
Page 17 and 18: homo3 Homodecoupling control for th
Page 19 and 20: loadcolors Load colors for graphics
Page 21 and 22: Noesy Convert the parameter to a NO
Page 23 and 24: plcosy Plot COSY- and NOESY-type sp
Page 25 and 26: R r Recall display parameter set (M
Page 27 and 28: seqfil Pulse sequence name (P).....
Page 29 and 30: sqsavestudy Macro to save study par
Page 31: updaterev Update after installing n
Page 35 and 36: 32 Command and Parameter Reference
Page 37 and 38: Notational Conventions md(to_exp) n
Page 39 and 40: A aph aph0 aphb aphx appdirs appmod
Page 41 and 42: A See also: parent (nested) macros
Page 43 and 44: A acosy Syntax: Description: See al
Page 45 and 46: A spin sw vp vs wp Sample spin rate
Page 47 and 48: A window should open automatically
Page 49 and 50: A See also: 595. Sample failed to i
Page 51 and 52: A spadd sub Add current spectrum to
Page 53 and 54: A Examples: See also: • 'ss' spec
Page 55 and 56: A Examples: See also: adept adept('
Page 57 and 58: A lock sample Submit an Autolock ex
Page 59 and 60: A Arguments: (3) Line containing an
Page 61 and 62: A See also: VnmrJ User Programming
Page 63 and 64: A appmode Description: Values: Appl
Page 65 and 66: A asin Find arc sine of number (C)
Page 67 and 68: A Arguments: Examples: When called
Page 69 and 70: A go_ load loc lock method sample s
Page 71 and 72: A Aufindz0 Automatic adjustment of
Page 73 and 74: A Values: 'y' indicates automation
Page 75 and 76: A Description: Arguments: Examples:
Page 77 and 78: A Examples: Examples: See also: >9
Page 79 and 80: A See also: NMR Spectroscopy User G
Page 81 and 82: A Examples: See also: number_argume
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A dscale pscale Display scale below
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B Arguments: Examples: See also: me
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B This command should rarely be use
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B See also: NMR Spectroscopy User G
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B 88 Command and Parameter Referenc
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C contact_time MAS cross-polarizati
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C Description: See also: Calculates
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C See also: 127 for imaging attenua
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C See also: NMR Spectroscopy User G
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C Description: checkstring is used
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C clfreq Description: See also: Cal
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C it runs in interactive mode; if n
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C Arguments: Examples: See also:
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C Description: Arguments: See also:
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C Examples: See also: • -dxxx, wh
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C Dqcosy relayh Set up parameters f
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C Related: apptype Application type
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C cr2 Description: See also: Cursor
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C crl Description: See also: Clear
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C See also: NMR Spectroscopy User G
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C 120 Command and Parameter Referen
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D delta Cursor difference in direct
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D dosygamma dosytimecubed dot1 dotf
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D See also: If d0='n', the software
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D daslp Description: Values: See al
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D dc Description: See also: Calcula
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D Arguments: Examples: See also: ds
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D ft2d imconi wft2d Fourier transfo
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D Syntax: Description: ddrcr= Sets
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D dm2 dm3 Decoupler mode for second
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D Description: Arguments: Examples:
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D deptproc Description: See also: P
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D dfid Syntax: Description: See als
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D ho plfid pfww sc vo vpf wc Horizo
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D Arguments: Examples: See also: te
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D See also: NMR Spectroscopy User G
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D Examples: in these directories. T
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D nli z Find integral values (C) Ad
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D Values: See also: 5 Hz to 2 MHz i
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D Description: Arguments: Examples:
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D See also: outside of the acqi pro
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D dnode Applicability: Description:
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D Examples: See also: max_width is
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D Values: See also: deltaf (if the
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D See also: dpf('top','noll') dpf('
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D dplane Syntax: Description: Argum
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D Arguments: See also: The pulse pa
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D CAUTION: See also: Decoupling pow
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D Examples: See also: • 'xor','no
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D ds Syntax: Description: Arguments
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D Examples: See also: ds2dn ds2dn('
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D dseq4 Applicability: Description:
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D Values: See also: the digital fil
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D dsp Applicability: Description: V
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D Arguments: Examples: See also: Th
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D step is the increment for the spe
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D dsww ft1d ho intmod pl plww sc sc
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D dsvast2d Display VAST data in a p
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D homorof3 tn Delay between setting
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E See also: NMR Spectroscopy User G
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E enter Applicability: Syntax: Desc
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E ewrite Applicability: Syntax: Des
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E keyword 'maclib' 'command' 'ascii
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E exit Description: CAUTION: Call t
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E Arguments: Examples: See also: (3
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E Syntax: Description: Arguments: E
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F foldcc foldj foldt fontselect for
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F make3dcoef par2d Make 3D coeffici
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F Examples: See also: v1, v2... is
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F fiddleu Perform reference deconvo
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F Arguments: Examples: See also: st
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F slfreq sp usemark wp Measured lin
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F Arguments: Examples: See also: nf
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F focus Description: See also: Send
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F See also: format($snum,3,1):$rval
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F Examples: See also: type of tree
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F Examples: See also: start is the
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F See also: NMR Spectroscopy User G
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F • 'noop' is a keyword to not pe
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F See also: • 'ni2' is a keyword
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F Arguments: ft3d Entered from UNIX
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F make3dcoef ptspec3d set3dproc spe
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G gHSQC_d213 Ghsqctoxy gilson gin g
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G examined for signal level. If the
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G See also: Be aware that if an old
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G Examples: See also: extension is
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G Examples: See also: • 'xall' is
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G Arguments: Examples: See also: A
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G See also: detected dimension. Thi
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G gilson Syntax: Description: See a
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G Values: 'n' disable spinning duri
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G gmax Description: See also: Maxim
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G go seqfil usergo Submit experimen
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G grayctr Gray level window adjustm
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G gtnroesy Applicability: Descripti
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G 274 Command and Parameter Referen
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H homo2 homo3 homo4 HOMODEC homo2d
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H See also: j2r is the reduced coup
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H Examples: See also: hcdept hcdept
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H homo homorof1 homorof2 homorof3 t
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H Examples: See also: hdwshimlist='
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H HMQC_d2 Description: Set up param
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H Related: dm3 Decoupler mode for t
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hoult Set parameters alfa and rof2
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H hsqctoxySE Description: Set up pa
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H htss1 Description: Values: See al
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H 296 Command and Parameter Referen
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I ihwinfo Syntax: Description: Argu
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I Examples: See also: dir_flag imag
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I See also: fn. The insref paramete
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I See also: NMR Spectroscopy User G
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I category type gettype returns str
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I 308 Command and Parameter Referen
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J Arguments: Examples: See also: ex
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J jviewports Viewport layout (P) De
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K See also: NMR Spectroscopy User G
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K 316 Command and Parameter Referen
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L lp1 lp2 lpalg lpalg1 lpalg2 lpext
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L Values: See also: A positive valu
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L legrelay Description: Values: See
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L See also: in Hz, analogous to sfr
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L Examples: See also: • 'comment'
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L Examples: See also: ln(.5) ln(val
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L Values: See also: 1, 2, 3, or 4 (
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L See also: User Guide: Solid-State
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L See also: lookup('delimiter',' ,\
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L strtlp strtext Starting point for
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L lpfilt ni LP coefficients to calc
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L lpprint Description: Values: See
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L Arguments: Examples: directory is
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L lsfrq1 Description: Values: Frequ
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L 346 Command and Parameter Referen
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M movetof mp mqcosy mrev8 mrfb mref
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M Arguments: Examples: See also: ov
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M make3dcoef Syntax: Description: A
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M element_number and format argumen
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M Description: Arguments: (5) mark
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M Values: See also: Note that the V
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M mf Syntax: Description: Arguments
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M mfopen mftrace rfblk rftrace Memo
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M mlabel Description: See also: Men
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M Examples: See also: mp(4) mp(2,3)
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M Description: Examples: An array o
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M CAUTION: See also: One special ca
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N newmenu Syntax: Description: Argu
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N ni3 Description: See also: Number
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N Arguments: Examples: See also: 'p
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N r6 returns the percentage channel
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N ntrig Applicability: Description:
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N 382 Command and Parameter Referen
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O Arguments: Examples: See also: %d
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O paros sw Create additional parame
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O 'n' causes normal acquisition to
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P pboxpar pboxrst pboxunits pcon pc
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P prescan_CoilTable prescan_tn prin
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P Description: Values: See also: Sp
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P See also: The pa1 command is only
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P page Description: Name of page (P
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P Description: See also: Creates th
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P See also: The quality of filterin
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P See also: User Programming Relate
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P See also: NMR Spectroscopy User G
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P pboxpar Syntax: Description: Argu
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P See also: User Programming Relate
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P Values: See also: A three-charact
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P Examples: See also: reference_reg
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P phase Syntax: Description: Argume
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P phfid1 Description: Values: See a
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P pintvast Applicability: Syntax: D
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P ft1d ho intmod plww pshr pslw sc
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P plate_glue Applicability: Descrip
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P vpf wc Current vertical position
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P • Negative or positive contours
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P Related: protune Macro to start P
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P plothiresprep High resolution plo
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P p1 pw First pulse width (P) Pulse
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P Examples: See also: pprofile ppro
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P Examples: str is a string that ca
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P See also: VnmrJ User Programming
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P See also: proc1d does not work wi
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P Description: Arguments: Examples:
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P Third case: exec — keyword that
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P Examples: See also: C3 sets lb1=-
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P See also: searched for when an ex
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P sw sw1 sw2 Spectral width in dire
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P See also: point are used in the s
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P Arguments: Examples: See also: fi
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P 466 Command and Parameter Referen
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Q ? Display the value of an individ
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R rfband rfblk rfchannel rfchtype r
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R See also: experiment with the rt
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R Examples: The par1 and par2 param
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R Examples: See also: readhw('z1c',
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R Description: Produces 2D images (
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R record Syntax: Description: Argum
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R Related: reff1 Reference f2 Indir
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R See also: if it is a heteronuclea
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R the current tree, if it exists th
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R vnmrjcmd() wp Commands to invoke
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R Arguments: Examples: See also: us
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R Values: See also: The values of r
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R rfp Description: Values: See also
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R rfwg Description: Values: See als
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R rl rl2 scalesw1 sfrq Set ref. lin
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R See also: NMR Spectroscopy User G
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R See also: NMR Spectroscopy User G
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R Examples: See also: noabort — k
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S setcolor setdecpars setdec2pars s
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S spincad Run SpinCAD program (C) s
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S Description: Saves a copy of the
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S See also: NMR Spectroscopy User G
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S sd2 Applicability: Description: S
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S Examples: See also: • 'f1f3', '
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S Arguments: Examples: See also: se
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S See also: initialization, etc.).
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S See also: User Programming Relate
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S See also: Pulsed Field Gradient M
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S Arguments: Examples: Syntax 5 eje
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S Step Value Parameter setting Argu
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S sw rof2 Spectral width in directl
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S sw tpwr Spectral width in directl
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S Arguments: Examples: See also: re
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S See also: flushing mode. In the l
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S Examples: See also: trev time rev
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S See also: (e.g.: multiselective)
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S See also: and radial shims x1, y1
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S Arguments: See also: shift sets t
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S testsn testct Test signal-to-nois
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S spadd Syntax: Description: Argume
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S See also: If the spinning speed i
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S dsp initialize_iterate iterate ni
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S sqdir sqname studyid Svfname Stud
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S ss Steady-state transients (P) De
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S ssfilter sslsfrq ssntaps wft Full
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S shim wshim Submit an Autoshim exp
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S See also: sub('new') sub('trace',
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S Examples: See also: where numgray
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S Percent sign (%) substitution spe
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S Examples: See also: The svs comma
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S See also: variable evolution time
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T tpwrm Observe transmitter linear
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T Arguments: Examples: See also: 2D
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T Arguments: Examples: See also: 1
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T Syntax: Values: status of the cur
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T textis Syntax: Description: Argum
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T nt sw1 sw2 Number of transients (
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T tnroesy Description: See also: Se
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T tpwr tpwrm Observe transmitter po
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T Examples: See also: the 1 H, the
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T tupwr Description: See also: Tran
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U See also: NMR Spectroscopy User G
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U See also: NMR Spectroscopy User G
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U 608 Command and Parameter Referen
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V vast1d Applicability: Description
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V vf Description: Values: See also:
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V Examples: See also: Changing sele
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V See also: vnmr2sc('gcosy',2,3) nt
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V Examples: See also: file is the n
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V See also: NMR Spectroscopy User G
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V See also: NMR Spectroscopy User G
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V See also: VnmrJ Installation and
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W wp wp1 wp2 write writefid writepa
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W Values: Width, in mm. See also: N
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W wet Description: Flag to turn on
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W Examples: See also: before each o
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W Description: Arguments: See also:
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W See also: NMR Spectroscopy User G
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W wp2 Description: See also: Width
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W writefid Syntax: Description: Arg
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W See also: 'e' or 'exp' sets that
Page 647 and 648:
W Arguments: Examples: See also:
Page 649 and 650:
W 646 Command and Parameter Referen
Page 651 and 652:
X xpolar1 xy xz xz2 Set up paramete
Page 653 and 654:
X xmaddreq Applicability: Descripti
Page 655 and 656:
X Description: See also: Find the n
Page 657 and 658:
X Description: See also: A macro th
Page 659 and 660:
X Description: See also: Sets up th
Page 661 and 662:
Y Values: See also: If shimset is 1
Page 663 and 664:
Z Arguments: Examples: See also: be
Page 665 and 666:
Z See also: NMR Spectroscopy User G
Page 667 and 668:
Z See also: NMR Spectroscopy User G
Page 669 and 670:
Z 666 Command and Parameter Referen
Page 671 and 672:
Index type of data processing, 447
Page 673 and 674:
Index analysis of DEPT data, 70 car
Page 675 and 676:
Index parameters in a parameter tre
Page 677 and 678:
Index contour plot, 130 contour plo
Page 679 and 680:
Index FDM program, running, 219 FID
Page 681 and 682:
Index gradient calibration pulse se
Page 683 and 684:
Index linear modulator power, 179,
Page 685 and 686:
Index Oxford-Sorenson VT controller
Page 687 and 688:
Index Hewlett-Packard, 648 maximum
Page 689 and 690:
Index recording keyboard entries, 4
Page 691 and 692:
Index create parameters, 401 filter
Page 693 and 694:
Index t 2 dimension in, 343 tablib
Page 695:
Index WETPWXCAL pulse sequence, 631
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VnmrJ Command and Parameter Reference VnmrJ 2.2D

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