VnmrJ Command and Parameter Reference VnmrJ 2.2D

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graphis Return the current graphics display status (C)................................ 269 grayctr Gray level window adjustment (P) ................................................. 270 graysl Gray level slope (contrast) adjustment (P) ..................................... 270 grecovery Eddy current testing (M)................................................................. 270 grid Draw a grid on a 2D display (M).................................................... 270 groupcopy Copy parameters of group from one tree to another (C)................. 271 gspoil Spoiler gradient level (P) ................................................................ 271 gsspat Slice-select gradient shape (P)........................................................ 271 gtnnoesy Set up a PFG TNNOESY parameter set (M).................................. 271 gtnroesy Set up a PFG absolute-value ROESY parameter set (M) ............... 272 gtotlimit Gradient total limit (P).................................................................... 272 gtrim Trim gradient level (P).................................................................... 272 gxmax,gymax,gzmax Maximum gradient strength for each axis (P) ................................ 272 gzlvl Pulsed field gradient strength (P).................................................... 272 gzsize Number of z-axis shims used by gradient shimming (P)................ 272 gzwin Spectral width percentage used for gradient shimming (P)............ 273 H h1 Automated proton acquisition (M) ................................................. 276 h1freq Proton frequency of spectrometer (P)............................................. 277 h1p Process 1D proton spectra (M) ....................................................... 277 h2cal Calculate strength of the decoupler field (C).................................. 277 halt Abort acquisition with no error (C) ................................................ 278 hc Automated proton and carbon acquisition (M)............................... 278 hcapt Automated proton, carbon, and APT acquisition (M) .................... 279 hcchtocsy Set up parameters for HCCHTOCSY pulse sequence (M)............. 279 hccorr Automated proton, carbon, and HETCOR acquisition (M)............ 279 hcdept Automated proton, carbon, and DEPT acquisition (M) .................. 279 hcosy Automated proton and COSY acquisition (M) ............................... 280 hdmf Modulation frequency for homonuclear decoupling (P)................. 280 hcmult Execute protocol actions of apptype hcmult (M)............................ 280 hdof Frequency offset for homodecoupling (P) ...................................... 281 hdpwr Power level for homodecoupling (P) .............................................. 281 hdpwrf Homodecoupling fine power (optional) (P).................................... 282 hdres Sets the tip angle resolution (P) ...................................................... 282 hdseq Waveform filename for band selective decoupling (P)................... 283 hdwshim Hardware shimming (P).................................................................. 283 hdwshimlist List of shims for hardware shimming (P) ....................................... 283 het2dj Set up parameters for HET2DJ pulse sequence (M)....................... 284 HETCOR Change parameters for HETCOR experiment (M)......................... 284 hetcor Set up parameters for HETCOR pulse sequence (M)..................... 284 hetcorcp1 Set up parameters for solids HETCOR pulse sequence (M) .......... 284 hetcorps Set up parameters for HETCORPS pulse sequence (M) ................ 284 hetero2d Execute protocol actions of apptype hetero2d (M)......................... 284 hidecommand Execute macro instead of command with same name (C).............. 285 hipwrampenable High Power Amplifier Enable (P) ................................................. 285 Hmbc Convert the parameter to a HMBC experiment (M)....................... 285 Hmqc Convert the parameter to a HMQC experiment (M)....................... 285 HMQC15 Set up parameters for 15 N HMQC experiment (M)........................ 285 HMQC_d2 Set up parameters for 15 N HMQC experiment using dec. 2 (M).... 286 HMQC_d213 Set up parameters for 13 C HMQC experiment using dec. 2 (M).... 286 hmqcr Set up parameters for HMQCR pulse sequence (M) ...................... 286 Hmqctoxy Convert the parameter to a HMQCTOXY experiment (M)............ 286 HMQCTOXY15 Set up parameters for 15 N HMQCTOXY experiment (M)............. 286 HMQCTOXY_d2 Set up parameters for 15 N HMQCTOXY using decoupler 2 (M) .. 286 HMQCTOXY_d213 Set up parameters for 13 C HMQCTOXY using decoupler 2 (M)... 286 hmqctoxy3d Set up parameters for HMQC-TOCSY 3D pulse sequence (M)..... 286 ho Horizontal offset (P) ....................................................................... 286 hom2dj Set up parameters for HOM2DJ pulse sequence (M) ..................... 286 homo Homodecoupling control for the observe channel (P) .................... 287 homo2 Homodecoupling control for second decoupler (P)........................ 287 01-999380-00 A 0808 Command and Parameter Reference for VnmrJ 2.2D 13
homo3 Homodecoupling control for third decoupler (P) ........................... 287 homo4 Homodecoupling control for fourth decoupler (P) ......................... 288 HOMODEC Change parameters for HOMODEC experiment (M)..................... 288 homo2d Execute protocol actions of apptype homo2d (M).......................... 288 homorof1 Delay before turning on homo decoupling rf (P)............................ 288 homorof2 Delay after blanking the amp and setting T/R switch to recv (P)... 289 homorof3 Delay between setting T/R to receive and gating the recvr on (P) . 289 hoult Set parameters alfa and rof2 according to Hoult (M) ..................... 290 hpa Plot parameters on special preprinted chart paper (C).................... 290 Hprescan Proton prescan (P)) ........................................................................ 290 hregions Select integral regions in proton spectrum (M) .............................. 290 hs Homospoil pulses (P)...................................................................... 290 Hsqc Convert the parameter to a HSQC experiment (M)........................ 291 HSQC15 Set up parameters for 15 N HSQC experiment (M) ......................... 291 HSQC_d2 Set up parameters for 15 N HSQC experiment using dec. 2 (M)..... 291 HSQC_d213 Set up parameters for 13 C HSQC experiment using dec. 2 (M) ..... 291 HsqcHT Set up the HsqcHT experiment (M)................................................ 291 Hsqctoxy Convert parameters to a HSQCTOXY experiment (M) ................. 291 HSQCTOXY15 Set up parameters for 15 N HSQCTOXY experiment (M) .............. 291 HSQCTOXY_d2 Set up parameters for 15 N HSQCTOXY using decoupler 2 (M).... 291 HSQCTOXY_d213 Set up parameters for 13 C HSQCTOXY using decoupler 2 (M).... 291 hsqctoxySE Set up parameters for HSQC-TOCSY 3D pulse sequence (M)...... 292 hsrotor Display rotor speed for solids operation (P) ................................... 292 hst Homospoil time (P)......................................................................... 292 htbitrev Hadamard bit reversal flag (P)........................................................ 292 htbw1 Hadamard pulse excitation bandwidth in ni (P).............................. 292 htcal1 RF calibration flag for Hadamard waveforms in ni (P) .................. 293 htfrq1 Hadamard frequency list in ni (P)................................................... 293 htofs1 Hadamard offset in ni (P)................................................................ 293 htpwr1 Power level for RF calibration of Hadamard waveforms in ni (P). 293 htss1 Stepsize for Hadamard waveforms in ni (P) ................................. 294 hzmm Scaling factor for plots (P).............................................................. 294 hztomm Convert locations from Hz or ppm to plotter units (C)................... 294 I i Insert sample (M)............................................................................ 297 ihwinfo Hardware status of console (U) ...................................................... 298 il Interleave arrayed and 2D experiments (P) .................................... 298 ilfid Interleave FIDs during data processing (C).................................... 298 imagefile Display an image file (M)............................................................... 298 imagemath Fit images to an specified function (M).......................................... 299 imageprint Plot non interactive gray scale image (M) ...................................... 300 imconi Display 2D data in interactive grayscale mode (M) ....................... 300 in Lock and spin interlock (P)............................................................. 300 inadqt Set up parameters for INADEQUATE pulse sequence (M) ........... 300 index2 Projection or 3D plane index selected (P) ...................................... 301 inept Set up parameters for INEPT pulse sequence (M).......................... 301 initialize_iterate Set iterate string to contain relevant parameters (M)...................... 301 input Receive input from keyboard (C) ................................................... 301 ins Integral normalization scale (P)...................................................... 301 ins2 2D volume value (P) ....................................................................... 302 insref Fourier number scaled value of an integral (P)............................... 302 ins2ref Fourier number scaled volume of a peak (P).................................. 302 insert Insert sample (M)............................................................................ 302 inset Display an inset spectrum (C)......................................................... 303 integ Find largest integral in a specified region (C) ................................ 303 integrate Automatically integrate 1D spectrum (M)...................................... 303 intmod Integral display mode (P)................................................................ 304 intvast Produces a text file of integral regions (M) .................................... 304 io Integral offset (P) ............................................................................ 304 is Integral scale (P) ............................................................................. 304 14 Command and Parameter Reference for VnmrJ 2.2D 01-999380-00 A 0808
Page 1 and 2: VnmrJ Command and Parameter Referen
Page 3 and 4: VnmrJ Command and Parameter Referen
Page 5 and 6: 2 Command and Parameter Reference f
Page 7 and 8: arraydim Dimension of experiment (P
Page 9 and 10: copy Copy a file (C) ..............
Page 11 and 12: dglc Display group of LC-NMR parame
Page 13 and 14: dsshn Display stacked spectra horiz
Page 15: gcal Gradient calibration constant
Page 19 and 20: loadcolors Load colors for graphics
Page 21 and 22: Noesy Convert the parameter to a NO
Page 23 and 24: plcosy Plot COSY- and NOESY-type sp
Page 25 and 26: R r Recall display parameter set (M
Page 27 and 28: seqfil Pulse sequence name (P).....
Page 29 and 30: sqsavestudy Macro to save study par
Page 31 and 32: updaterev Update after installing n
Page 33 and 34: xm1 Utility macro for study queue e
Page 35 and 36: 32 Command and Parameter Reference
Page 37 and 38: Notational Conventions md(to_exp) n
Page 39 and 40: A aph aph0 aphb aphx appdirs appmod
Page 41 and 42: A See also: parent (nested) macros
Page 43 and 44: A acosy Syntax: Description: See al
Page 45 and 46: A spin sw vp vs wp Sample spin rate
Page 47 and 48: A window should open automatically
Page 49 and 50: A See also: 595. Sample failed to i
Page 51 and 52: A spadd sub Add current spectrum to
Page 53 and 54: A Examples: See also: • 'ss' spec
Page 55 and 56: A Examples: See also: adept adept('
Page 57 and 58: A lock sample Submit an Autolock ex
Page 59 and 60: A Arguments: (3) Line containing an
Page 61 and 62: A See also: VnmrJ User Programming
Page 63 and 64: A appmode Description: Values: Appl
Page 65 and 66: A asin Find arc sine of number (C)
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A Arguments: Examples: When called
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A go_ load loc lock method sample s
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A Aufindz0 Automatic adjustment of
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A Values: 'y' indicates automation
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A Description: Arguments: Examples:
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A Examples: Examples: See also: >9
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A See also: NMR Spectroscopy User G
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A Examples: See also: number_argume
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A dscale pscale Display scale below
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B Arguments: Examples: See also: me
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B This command should rarely be use
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B See also: NMR Spectroscopy User G
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B 88 Command and Parameter Referenc
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C contact_time MAS cross-polarizati
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C Description: See also: Calculates
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C See also: 127 for imaging attenua
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C See also: NMR Spectroscopy User G
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C Description: checkstring is used
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C clfreq Description: See also: Cal
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C it runs in interactive mode; if n
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C Arguments: Examples: See also:
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C Description: Arguments: See also:
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C Examples: See also: • -dxxx, wh
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C Dqcosy relayh Set up parameters f
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C Related: apptype Application type
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C cr2 Description: See also: Cursor
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C crl Description: See also: Clear
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C See also: NMR Spectroscopy User G
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C 120 Command and Parameter Referen
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D delta Cursor difference in direct
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D dosygamma dosytimecubed dot1 dotf
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D See also: If d0='n', the software
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D daslp Description: Values: See al
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D dc Description: See also: Calcula
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D Arguments: Examples: See also: ds
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D ft2d imconi wft2d Fourier transfo
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D Syntax: Description: ddrcr= Sets
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D dm2 dm3 Decoupler mode for second
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D Description: Arguments: Examples:
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D deptproc Description: See also: P
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D dfid Syntax: Description: See als
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D ho plfid pfww sc vo vpf wc Horizo
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D Arguments: Examples: See also: te
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D See also: NMR Spectroscopy User G
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D Examples: in these directories. T
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D nli z Find integral values (C) Ad
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D Values: See also: 5 Hz to 2 MHz i
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D Description: Arguments: Examples:
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D See also: outside of the acqi pro
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D dnode Applicability: Description:
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D Examples: See also: max_width is
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D Values: See also: deltaf (if the
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D See also: dpf('top','noll') dpf('
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D dplane Syntax: Description: Argum
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D Arguments: See also: The pulse pa
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D CAUTION: See also: Decoupling pow
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D Examples: See also: • 'xor','no
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D ds Syntax: Description: Arguments
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D Examples: See also: ds2dn ds2dn('
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D dseq4 Applicability: Description:
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D Values: See also: the digital fil
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D dsp Applicability: Description: V
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D Arguments: Examples: See also: Th
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D step is the increment for the spe
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D dsww ft1d ho intmod pl plww sc sc
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D dsvast2d Display VAST data in a p
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D homorof3 tn Delay between setting
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E See also: NMR Spectroscopy User G
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E enter Applicability: Syntax: Desc
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E ewrite Applicability: Syntax: Des
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E keyword 'maclib' 'command' 'ascii
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E exit Description: CAUTION: Call t
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E Arguments: Examples: See also: (3
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E Syntax: Description: Arguments: E
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F foldcc foldj foldt fontselect for
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F make3dcoef par2d Make 3D coeffici
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F Examples: See also: v1, v2... is
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F fiddleu Perform reference deconvo
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F Arguments: Examples: See also: st
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F slfreq sp usemark wp Measured lin
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F Arguments: Examples: See also: nf
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F focus Description: See also: Send
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F See also: format($snum,3,1):$rval
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F Examples: See also: type of tree
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F Examples: See also: start is the
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F See also: NMR Spectroscopy User G
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F • 'noop' is a keyword to not pe
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F See also: • 'ni2' is a keyword
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F Arguments: ft3d Entered from UNIX
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F make3dcoef ptspec3d set3dproc spe
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G gHSQC_d213 Ghsqctoxy gilson gin g
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G examined for signal level. If the
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G See also: Be aware that if an old
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G Examples: See also: extension is
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G Examples: See also: • 'xall' is
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G Arguments: Examples: See also: A
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G See also: detected dimension. Thi
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G gilson Syntax: Description: See a
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G Values: 'n' disable spinning duri
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G gmax Description: See also: Maxim
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G go seqfil usergo Submit experimen
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G grayctr Gray level window adjustm
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G gtnroesy Applicability: Descripti
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G 274 Command and Parameter Referen
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H homo2 homo3 homo4 HOMODEC homo2d
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H See also: j2r is the reduced coup
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H Examples: See also: hcdept hcdept
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H homo homorof1 homorof2 homorof3 t
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H Examples: See also: hdwshimlist='
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H HMQC_d2 Description: Set up param
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H Related: dm3 Decoupler mode for t
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hoult Set parameters alfa and rof2
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H hsqctoxySE Description: Set up pa
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H htss1 Description: Values: See al
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H 296 Command and Parameter Referen
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I ihwinfo Syntax: Description: Argu
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I Examples: See also: dir_flag imag
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I See also: fn. The insref paramete
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I See also: NMR Spectroscopy User G
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I category type gettype returns str
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I 308 Command and Parameter Referen
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J Arguments: Examples: See also: ex
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J jviewports Viewport layout (P) De
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K See also: NMR Spectroscopy User G
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K 316 Command and Parameter Referen
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L lp1 lp2 lpalg lpalg1 lpalg2 lpext
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L Values: See also: A positive valu
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L legrelay Description: Values: See
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L See also: in Hz, analogous to sfr
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L Examples: See also: • 'comment'
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L Examples: See also: ln(.5) ln(val
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L Values: See also: 1, 2, 3, or 4 (
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L See also: User Guide: Solid-State
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L See also: lookup('delimiter',' ,\
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L strtlp strtext Starting point for
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L lpfilt ni LP coefficients to calc
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L lpprint Description: Values: See
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L Arguments: Examples: directory is
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L lsfrq1 Description: Values: Frequ
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L 346 Command and Parameter Referen
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M movetof mp mqcosy mrev8 mrfb mref
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M Arguments: Examples: See also: ov
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M make3dcoef Syntax: Description: A
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M element_number and format argumen
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M Description: Arguments: (5) mark
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M Values: See also: Note that the V
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M mf Syntax: Description: Arguments
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M mfopen mftrace rfblk rftrace Memo
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M mlabel Description: See also: Men
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M Examples: See also: mp(4) mp(2,3)
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M Description: Examples: An array o
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M CAUTION: See also: One special ca
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N newmenu Syntax: Description: Argu
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N ni3 Description: See also: Number
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N Arguments: Examples: See also: 'p
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N r6 returns the percentage channel
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N ntrig Applicability: Description:
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N 382 Command and Parameter Referen
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O Arguments: Examples: See also: %d
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O paros sw Create additional parame
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O 'n' causes normal acquisition to
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P pboxpar pboxrst pboxunits pcon pc
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P prescan_CoilTable prescan_tn prin
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P Description: Values: See also: Sp
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P See also: The pa1 command is only
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P page Description: Name of page (P
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P Description: See also: Creates th
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P See also: The quality of filterin
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P See also: User Programming Relate
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P See also: NMR Spectroscopy User G
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P pboxpar Syntax: Description: Argu
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P See also: User Programming Relate
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P Values: See also: A three-charact
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P Examples: See also: reference_reg
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P phase Syntax: Description: Argume
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P phfid1 Description: Values: See a
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P pintvast Applicability: Syntax: D
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P ft1d ho intmod plww pshr pslw sc
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P plate_glue Applicability: Descrip
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P vpf wc Current vertical position
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P • Negative or positive contours
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P Related: protune Macro to start P
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P plothiresprep High resolution plo
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P p1 pw First pulse width (P) Pulse
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P Examples: See also: pprofile ppro
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P Examples: str is a string that ca
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P See also: VnmrJ User Programming
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P See also: proc1d does not work wi
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P Description: Arguments: Examples:
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P Third case: exec — keyword that
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P Examples: See also: C3 sets lb1=-
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P See also: searched for when an ex
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P sw sw1 sw2 Spectral width in dire
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P See also: point are used in the s
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P Arguments: Examples: See also: fi
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P 466 Command and Parameter Referen
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Q ? Display the value of an individ
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R rfband rfblk rfchannel rfchtype r
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R See also: experiment with the rt
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R Examples: The par1 and par2 param
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R Examples: See also: readhw('z1c',
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R Description: Produces 2D images (
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R record Syntax: Description: Argum
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R Related: reff1 Reference f2 Indir
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R See also: if it is a heteronuclea
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R the current tree, if it exists th
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R vnmrjcmd() wp Commands to invoke
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R Arguments: Examples: See also: us
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R Values: See also: The values of r
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R rfp Description: Values: See also
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R rfwg Description: Values: See als
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R rl rl2 scalesw1 sfrq Set ref. lin
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R See also: NMR Spectroscopy User G
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R See also: NMR Spectroscopy User G
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R Examples: See also: noabort — k
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S setcolor setdecpars setdec2pars s
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S spincad Run SpinCAD program (C) s
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S Description: Saves a copy of the
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S See also: NMR Spectroscopy User G
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S sd2 Applicability: Description: S
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S Examples: See also: • 'f1f3', '
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S Arguments: Examples: See also: se
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S See also: initialization, etc.).
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S See also: User Programming Relate
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S See also: Pulsed Field Gradient M
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S Arguments: Examples: Syntax 5 eje
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S Step Value Parameter setting Argu
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S sw rof2 Spectral width in directl
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S sw tpwr Spectral width in directl
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S Arguments: Examples: See also: re
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S See also: flushing mode. In the l
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S Examples: See also: trev time rev
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S See also: (e.g.: multiselective)
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S See also: and radial shims x1, y1
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S Arguments: See also: shift sets t
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S testsn testct Test signal-to-nois
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S spadd Syntax: Description: Argume
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S See also: If the spinning speed i
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S dsp initialize_iterate iterate ni
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S sqdir sqname studyid Svfname Stud
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S ss Steady-state transients (P) De
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S ssfilter sslsfrq ssntaps wft Full
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S shim wshim Submit an Autoshim exp
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S See also: sub('new') sub('trace',
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S Examples: See also: where numgray
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S Percent sign (%) substitution spe
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S Examples: See also: The svs comma
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S See also: variable evolution time
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T tpwrm Observe transmitter linear
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T Arguments: Examples: See also: 2D
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T Arguments: Examples: See also: 1
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T Syntax: Values: status of the cur
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T textis Syntax: Description: Argum
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T nt sw1 sw2 Number of transients (
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T tnroesy Description: See also: Se
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T tpwr tpwrm Observe transmitter po
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T Examples: See also: the 1 H, the
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T tupwr Description: See also: Tran
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U See also: NMR Spectroscopy User G
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U See also: NMR Spectroscopy User G
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U 608 Command and Parameter Referen
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V vast1d Applicability: Description
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V vf Description: Values: See also:
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V Examples: See also: Changing sele
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V See also: vnmr2sc('gcosy',2,3) nt
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V Examples: See also: file is the n
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V See also: NMR Spectroscopy User G
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V See also: NMR Spectroscopy User G
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V See also: VnmrJ Installation and
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W wp wp1 wp2 write writefid writepa
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W Values: Width, in mm. See also: N
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W wet Description: Flag to turn on
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W Examples: See also: before each o
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W Description: Arguments: See also:
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W See also: NMR Spectroscopy User G
Page 641 and 642:
W wp2 Description: See also: Width
Page 643 and 644:
W writefid Syntax: Description: Arg
Page 645 and 646:
W See also: 'e' or 'exp' sets that
Page 647 and 648:
W Arguments: Examples: See also:
Page 649 and 650:
W 646 Command and Parameter Referen
Page 651 and 652:
X xpolar1 xy xz xz2 Set up paramete
Page 653 and 654:
X xmaddreq Applicability: Descripti
Page 655 and 656:
X Description: See also: Find the n
Page 657 and 658:
X Description: See also: A macro th
Page 659 and 660:
X Description: See also: Sets up th
Page 661 and 662:
Y Values: See also: If shimset is 1
Page 663 and 664:
Z Arguments: Examples: See also: be
Page 665 and 666:
Z See also: NMR Spectroscopy User G
Page 667 and 668:
Z See also: NMR Spectroscopy User G
Page 669 and 670:
Z 666 Command and Parameter Referen
Page 671 and 672:
Index type of data processing, 447
Page 673 and 674:
Index analysis of DEPT data, 70 car
Page 675 and 676:
Index parameters in a parameter tre
Page 677 and 678:
Index contour plot, 130 contour plo
Page 679 and 680:
Index FDM program, running, 219 FID
Page 681 and 682:
Index gradient calibration pulse se
Page 683 and 684:
Index linear modulator power, 179,
Page 685 and 686:
Index Oxford-Sorenson VT controller
Page 687 and 688:
Index Hewlett-Packard, 648 maximum
Page 689 and 690:
Index recording keyboard entries, 4
Page 691 and 692:
Index create parameters, 401 filter
Page 693 and 694:
Index t 2 dimension in, 343 tablib
Page 695:
Index WETPWXCAL pulse sequence, 631
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VnmrJ Command and Parameter Reference VnmrJ 2.2D

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