VnmrJ Command and Parameter Reference VnmrJ 2.2D

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isadj Automatic integral scale adjustment (M)........................................ 304 isadj2 Automatic integral scale adjustment by powers of two (M)........... 305 isreal Utility macro to determine a parameter type (M) ........................... 305 isstring Utility macro to determine a parameter type (M) ........................... 306 iterate Parameters to be iterated (P)........................................................... 307 J jcurwin Work space numbers of all viewports (P)...................................... 309 jdesign Start Plot Designer Program (M) .................................................... 309 jexp Join existing experiment (C)........................................................... 309 jexp1–jexp9999 Join existing experiment and display new parameters (M) ............ 310 jplot Plot from Plot Designer program (C) ............................................. 310 jplotscale Scale plot parameters (M)............................................................... 310 jplotunscale Restore current experiment parameters (M) ................................... 311 jprint Prints the selected images to a printer or file (M)........................... 311 jumpret Set up parameters for JUMPRET pulse sequence (M) ................... 311 jviewport Work space numbers of the current viewports (P)......................... 311 jviewportlabel Work space labels for all viewport buttons (P).............................. 311 jviewports Viewport layout (P)........................................................................ 312 jwin Activate and record activity in current window (M) ...................... 312 K killft3d Terminate any ft3d process started in an experiment (M,U) .......... 313 killplot Stop plot jobs and remove from plot queue (M)............................. 313 killprint Stop print jobs and remove from print queue (M) .......................... 314 kind Kinetics analysis, decreasing intensity (M) .................................... 314 kinds Kinetics analysis, decreasing intensity, short form (M).................. 314 kini Kinetics analysis, increasing intensity (M)..................................... 314 kinis Kinetics analysis, increasing intensity, short form (M) .................. 315 L lastlk Last lock solvent used (P)............................................................... 318 lastmenu Menu to display when Return button is selected (P) ...................... 319 latch Frequency synthesizer latching (P)................................................. 319 lb Line broadening in directly detected dimension (P)....................... 319 lb1 Line broadening in 1st indirectly detected dimension (P) .............. 319 lb2 Line broadening in 2nd indirectly detected dimension (P)............. 320 lc1d Pulse sequence for LC-NMR (M)................................................... 320 lcpar2d Create 2D LC-NMR acquisition parameters (M) ........................... 320 lcpeak Peak number (P).............................................................................. 321 lcplot Plot LC-NMR data (M)................................................................... 321 lcpsgset Set up parameters for various LC-NMR pulse sequences (M)....... 321 lcset2d General setup for 2D LC-NMR experiments (M) .......................... 321 left Set display limits to left half of screen (C) ..................................... 321 legrelay Independent control of magnet leg relay (P) .................................. 322 length Determine length of a string (C)..................................................... 322 lf List files in directory (C) ................................................................ 322 liamp Amplitudes of integral reset points (P) ........................................... 322 lifrq Frequencies of integral reset points (P) .......................................... 323 liqbear Liquids Bearing Air Level (P) ........................................................ 323 listenoff Disable receipt of messages from send2Vnmr (M) ........................ 323 listenon Enable receipt of messages from send2Vnmr (M) ......................... 323 lkof Track changes in lock frequency (P) .............................................. 323 ll2d Automatic and interactive 2D peak picking (C) ............................. 324 ll2dbackup Copy current ll2d peak file to another file (M)............................... 327 ll2dmode Control display of peaks picked by ll2d (P) ................................... 327 llamp List of line amplitudes (P) .............................................................. 327 llfrq List of line frequencies (P).............................................................. 327 ln Find natural logarithm of a number (C).......................................... 327 load Load status of displayed shims (P) ................................................. 328 01-999380-00 A 0808 Command and Parameter Reference for VnmrJ 2.2D 15
loadcolors Load colors for graphics window and plotters (M) ........................ 328 loc Location of sample in tray (P) ........................................................ 329 locaction Locator action (M) ......................................................................... 329 lock Submit an Autolock experiment to acquisition (C) ........................ 329 lockacqtc Lock loop time constant during acquisition (P).............................. 329 lockfreq Lock frequency (P) ......................................................................... 330 lockgain Lock gain (P) .................................................................................. 331 lockphase Lock phase (P) ................................................................................ 331 lockpower Lock power (P) ............................................................................... 331 locktc Lock time constant (P).................................................................... 331 logate Transmitter local oscillator gate (P)................................................ 331 lookup Look up words and lines from a text file (C).................................. 332 locprotoexec Execute a protocol from the locator (M) ....................................... 334 lp First-order phase in directly detected dimension (P) ...................... 334 lp1 First-order phase in 1st indirectly detected dimension (P) ............. 335 lp2 First-order phase in 2nd indirectly detected dimension (P)............ 335 lpalg LP algorithm in np dimension (P)................................................... 335 lpalg1 LP algorithm in ni dimension (P) ................................................... 336 lpalg2 LP algorithm in ni2 dimension (P) ................................................. 336 lpext LP data extension in np dimension (P) ........................................... 336 lpext1 LP data extension in ni dimension (P)............................................ 336 lpext2 LP data extension in ni2 dimension (P) .......................................... 337 lpfilt LP coefficients to calculate in np dimension (P) ............................ 337 lpfilt1 LP coefficients to calculate in ni dimension (P) ............................. 337 lpfilt2 LP coefficients to calculate in ni2 dimension (P) ........................... 337 lpnupts LP number of data points in np dimension (P) ............................... 338 lpnupts1 LP number of data points in ni dimension (P) ................................ 338 lpnupts2 LP number of data points in ni2 dimension (P).............................. 338 lpopt LP algorithm data extension in np dimension (P)........................... 338 lpopt1 LP algorithm data extension in ni dimension (P) ........................... 339 lpopt2 LP algorithm data extension in ni2 dimension (P) ......................... 339 lpprint LP print output for np dimension (P).............................................. 340 lpprint1 LP print output for ni dimension (P)............................................... 340 lpprint2 LP print output for ni2 dimension (P)............................................. 340 lptrace LP output spectrum in np dimension (P) ........................................ 341 lptrace1 LP output spectrum in ni dimension (P) ......................................... 341 lptrace2 LP output spectrum in ni2 dimension (P) ....................................... 341 ls List files in directory (C) ................................................................ 341 lsfid Number of complex points to left-shift the np FID (P) .................. 342 lsfid1 Number of complex points to left-shift ni interferogram (P).......... 342 lsfid2 Number of complex points to left-shift ni2 interferogram (P)........ 343 lsfrq Frequency shift of the fn spectrum (P) ........................................... 343 lsfrq1 Frequency shift of the fn1 spectrum (P) ......................................... 344 lsfrq2 Frequency shift of the fn2 spectrum (P) ......................................... 344 lvl Zero-order baseline correction (P).................................................. 344 lvltlt Control sensitivity of lvl and tlt adjustments (P) ............................ 345 M macro Macro name (P) .............................................................................. 348 macrocat Display a user macro file in text window (C)................................. 348 macrocp Copy a user macro file (C).............................................................. 348 macrodir List user macro files (C) ................................................................. 349 macroedit Edit a macro with user-selectable editor (M).................................. 349 macrold Load a macro into memory (C)....................................................... 349 macrorm Remove a user macro (C) ............................................................... 350 macrosyscat Display a system macro file in text window (C) ............................ 350 macrosyscp Copy a system macro to become a user macro (C)......................... 350 macrosysdir List system macros (C) ................................................................... 351 macrosysrm Remove a system macro (C)........................................................... 351 macrovi Edit a user macro with the vi text editor (M).................................. 351 make3dcoef Make a 3D coefficients file from 2D coefficients (M) ................... 352 16 Command and Parameter Reference for VnmrJ 2.2D 01-999380-00 A 0808
Page 1 and 2: VnmrJ Command and Parameter Referen
Page 3 and 4: VnmrJ Command and Parameter Referen
Page 5 and 6: 2 Command and Parameter Reference f
Page 7 and 8: arraydim Dimension of experiment (P
Page 9 and 10: copy Copy a file (C) ..............
Page 11 and 12: dglc Display group of LC-NMR parame
Page 13 and 14: dsshn Display stacked spectra horiz
Page 15 and 16: gcal Gradient calibration constant
Page 17: homo3 Homodecoupling control for th
Page 21 and 22: Noesy Convert the parameter to a NO
Page 23 and 24: plcosy Plot COSY- and NOESY-type sp
Page 25 and 26: R r Recall display parameter set (M
Page 27 and 28: seqfil Pulse sequence name (P).....
Page 29 and 30: sqsavestudy Macro to save study par
Page 31 and 32: updaterev Update after installing n
Page 33 and 34: xm1 Utility macro for study queue e
Page 35 and 36: 32 Command and Parameter Reference
Page 37 and 38: Notational Conventions md(to_exp) n
Page 39 and 40: A aph aph0 aphb aphx appdirs appmod
Page 41 and 42: A See also: parent (nested) macros
Page 43 and 44: A acosy Syntax: Description: See al
Page 45 and 46: A spin sw vp vs wp Sample spin rate
Page 47 and 48: A window should open automatically
Page 49 and 50: A See also: 595. Sample failed to i
Page 51 and 52: A spadd sub Add current spectrum to
Page 53 and 54: A Examples: See also: • 'ss' spec
Page 55 and 56: A Examples: See also: adept adept('
Page 57 and 58: A lock sample Submit an Autolock ex
Page 59 and 60: A Arguments: (3) Line containing an
Page 61 and 62: A See also: VnmrJ User Programming
Page 63 and 64: A appmode Description: Values: Appl
Page 65 and 66: A asin Find arc sine of number (C)
Page 67 and 68: A Arguments: Examples: When called
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A go_ load loc lock method sample s
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A Aufindz0 Automatic adjustment of
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A Values: 'y' indicates automation
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A Description: Arguments: Examples:
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A Examples: Examples: See also: >9
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A See also: NMR Spectroscopy User G
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A Examples: See also: number_argume
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A dscale pscale Display scale below
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B Arguments: Examples: See also: me
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B This command should rarely be use
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B See also: NMR Spectroscopy User G
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B 88 Command and Parameter Referenc
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C contact_time MAS cross-polarizati
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C Description: See also: Calculates
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C See also: 127 for imaging attenua
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C See also: NMR Spectroscopy User G
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C Description: checkstring is used
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C clfreq Description: See also: Cal
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C it runs in interactive mode; if n
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C Arguments: Examples: See also:
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C Description: Arguments: See also:
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C Examples: See also: • -dxxx, wh
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C Dqcosy relayh Set up parameters f
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C Related: apptype Application type
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C cr2 Description: See also: Cursor
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C crl Description: See also: Clear
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C See also: NMR Spectroscopy User G
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C 120 Command and Parameter Referen
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D delta Cursor difference in direct
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D dosygamma dosytimecubed dot1 dotf
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D See also: If d0='n', the software
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D daslp Description: Values: See al
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D dc Description: See also: Calcula
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D Arguments: Examples: See also: ds
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D ft2d imconi wft2d Fourier transfo
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D Syntax: Description: ddrcr= Sets
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D dm2 dm3 Decoupler mode for second
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D Description: Arguments: Examples:
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D deptproc Description: See also: P
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D dfid Syntax: Description: See als
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D ho plfid pfww sc vo vpf wc Horizo
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D Arguments: Examples: See also: te
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D See also: NMR Spectroscopy User G
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D Examples: in these directories. T
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D nli z Find integral values (C) Ad
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D Values: See also: 5 Hz to 2 MHz i
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D Description: Arguments: Examples:
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D See also: outside of the acqi pro
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D dnode Applicability: Description:
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D Examples: See also: max_width is
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D Values: See also: deltaf (if the
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D See also: dpf('top','noll') dpf('
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D dplane Syntax: Description: Argum
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D Arguments: See also: The pulse pa
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D CAUTION: See also: Decoupling pow
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D Examples: See also: • 'xor','no
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D ds Syntax: Description: Arguments
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D Examples: See also: ds2dn ds2dn('
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D dseq4 Applicability: Description:
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D Values: See also: the digital fil
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D dsp Applicability: Description: V
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D Arguments: Examples: See also: Th
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D step is the increment for the spe
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D dsww ft1d ho intmod pl plww sc sc
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D dsvast2d Display VAST data in a p
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D homorof3 tn Delay between setting
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E See also: NMR Spectroscopy User G
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E enter Applicability: Syntax: Desc
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E ewrite Applicability: Syntax: Des
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E keyword 'maclib' 'command' 'ascii
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E exit Description: CAUTION: Call t
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E Arguments: Examples: See also: (3
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E Syntax: Description: Arguments: E
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F foldcc foldj foldt fontselect for
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F make3dcoef par2d Make 3D coeffici
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F Examples: See also: v1, v2... is
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F fiddleu Perform reference deconvo
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F Arguments: Examples: See also: st
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F slfreq sp usemark wp Measured lin
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F Arguments: Examples: See also: nf
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F focus Description: See also: Send
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F See also: format($snum,3,1):$rval
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F Examples: See also: type of tree
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F Examples: See also: start is the
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F See also: NMR Spectroscopy User G
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F • 'noop' is a keyword to not pe
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F See also: • 'ni2' is a keyword
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F Arguments: ft3d Entered from UNIX
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F make3dcoef ptspec3d set3dproc spe
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G gHSQC_d213 Ghsqctoxy gilson gin g
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G examined for signal level. If the
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G See also: Be aware that if an old
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G Examples: See also: extension is
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G Examples: See also: • 'xall' is
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G Arguments: Examples: See also: A
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G See also: detected dimension. Thi
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G gilson Syntax: Description: See a
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G Values: 'n' disable spinning duri
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G gmax Description: See also: Maxim
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G go seqfil usergo Submit experimen
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G grayctr Gray level window adjustm
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G gtnroesy Applicability: Descripti
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G 274 Command and Parameter Referen
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H homo2 homo3 homo4 HOMODEC homo2d
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H See also: j2r is the reduced coup
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H Examples: See also: hcdept hcdept
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H homo homorof1 homorof2 homorof3 t
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H Examples: See also: hdwshimlist='
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H HMQC_d2 Description: Set up param
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H Related: dm3 Decoupler mode for t
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hoult Set parameters alfa and rof2
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H hsqctoxySE Description: Set up pa
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H htss1 Description: Values: See al
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H 296 Command and Parameter Referen
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I ihwinfo Syntax: Description: Argu
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I Examples: See also: dir_flag imag
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I See also: fn. The insref paramete
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I See also: NMR Spectroscopy User G
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I category type gettype returns str
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I 308 Command and Parameter Referen
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J Arguments: Examples: See also: ex
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J jviewports Viewport layout (P) De
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K See also: NMR Spectroscopy User G
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K 316 Command and Parameter Referen
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L lp1 lp2 lpalg lpalg1 lpalg2 lpext
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L Values: See also: A positive valu
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L legrelay Description: Values: See
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L See also: in Hz, analogous to sfr
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L Examples: See also: • 'comment'
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L Examples: See also: ln(.5) ln(val
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L Values: See also: 1, 2, 3, or 4 (
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L See also: User Guide: Solid-State
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L See also: lookup('delimiter',' ,\
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L strtlp strtext Starting point for
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L lpfilt ni LP coefficients to calc
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L lpprint Description: Values: See
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L Arguments: Examples: directory is
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L lsfrq1 Description: Values: Frequ
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L 346 Command and Parameter Referen
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M movetof mp mqcosy mrev8 mrfb mref
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M Arguments: Examples: See also: ov
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M make3dcoef Syntax: Description: A
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M element_number and format argumen
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M Description: Arguments: (5) mark
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M Values: See also: Note that the V
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M mf Syntax: Description: Arguments
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M mfopen mftrace rfblk rftrace Memo
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M mlabel Description: See also: Men
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M Examples: See also: mp(4) mp(2,3)
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M Description: Examples: An array o
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M CAUTION: See also: One special ca
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N newmenu Syntax: Description: Argu
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N ni3 Description: See also: Number
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N Arguments: Examples: See also: 'p
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N r6 returns the percentage channel
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N ntrig Applicability: Description:
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N 382 Command and Parameter Referen
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O Arguments: Examples: See also: %d
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O paros sw Create additional parame
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O 'n' causes normal acquisition to
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P pboxpar pboxrst pboxunits pcon pc
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P prescan_CoilTable prescan_tn prin
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P Description: Values: See also: Sp
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P See also: The pa1 command is only
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P page Description: Name of page (P
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P Description: See also: Creates th
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P See also: The quality of filterin
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P See also: User Programming Relate
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P See also: NMR Spectroscopy User G
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P pboxpar Syntax: Description: Argu
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P See also: User Programming Relate
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P Values: See also: A three-charact
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P Examples: See also: reference_reg
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P phase Syntax: Description: Argume
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P phfid1 Description: Values: See a
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P pintvast Applicability: Syntax: D
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P ft1d ho intmod plww pshr pslw sc
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P plate_glue Applicability: Descrip
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P vpf wc Current vertical position
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P • Negative or positive contours
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P Related: protune Macro to start P
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P plothiresprep High resolution plo
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P p1 pw First pulse width (P) Pulse
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P Examples: See also: pprofile ppro
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P Examples: str is a string that ca
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P See also: VnmrJ User Programming
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P See also: proc1d does not work wi
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P Description: Arguments: Examples:
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P Third case: exec — keyword that
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P Examples: See also: C3 sets lb1=-
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P See also: searched for when an ex
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P sw sw1 sw2 Spectral width in dire
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P See also: point are used in the s
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P Arguments: Examples: See also: fi
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P 466 Command and Parameter Referen
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Q ? Display the value of an individ
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R rfband rfblk rfchannel rfchtype r
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R See also: experiment with the rt
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R Examples: The par1 and par2 param
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R Examples: See also: readhw('z1c',
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R Description: Produces 2D images (
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R record Syntax: Description: Argum
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R Related: reff1 Reference f2 Indir
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R See also: if it is a heteronuclea
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R the current tree, if it exists th
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R vnmrjcmd() wp Commands to invoke
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R Arguments: Examples: See also: us
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R Values: See also: The values of r
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R rfp Description: Values: See also
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R rfwg Description: Values: See als
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R rl rl2 scalesw1 sfrq Set ref. lin
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R See also: NMR Spectroscopy User G
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R See also: NMR Spectroscopy User G
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R Examples: See also: noabort — k
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S setcolor setdecpars setdec2pars s
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S spincad Run SpinCAD program (C) s
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S Description: Saves a copy of the
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S See also: NMR Spectroscopy User G
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S sd2 Applicability: Description: S
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S Examples: See also: • 'f1f3', '
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S Arguments: Examples: See also: se
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S See also: initialization, etc.).
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S See also: User Programming Relate
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S See also: Pulsed Field Gradient M
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S Arguments: Examples: Syntax 5 eje
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S Step Value Parameter setting Argu
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S sw rof2 Spectral width in directl
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S sw tpwr Spectral width in directl
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S Arguments: Examples: See also: re
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S See also: flushing mode. In the l
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S Examples: See also: trev time rev
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S See also: (e.g.: multiselective)
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S See also: and radial shims x1, y1
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S Arguments: See also: shift sets t
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S testsn testct Test signal-to-nois
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S spadd Syntax: Description: Argume
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S See also: If the spinning speed i
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S dsp initialize_iterate iterate ni
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S sqdir sqname studyid Svfname Stud
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S ss Steady-state transients (P) De
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S ssfilter sslsfrq ssntaps wft Full
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S shim wshim Submit an Autoshim exp
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S See also: sub('new') sub('trace',
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S Examples: See also: where numgray
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S Percent sign (%) substitution spe
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S Examples: See also: The svs comma
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S See also: variable evolution time
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T tpwrm Observe transmitter linear
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T Arguments: Examples: See also: 2D
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T Arguments: Examples: See also: 1
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T Syntax: Values: status of the cur
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T textis Syntax: Description: Argum
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T nt sw1 sw2 Number of transients (
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T tnroesy Description: See also: Se
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T tpwr tpwrm Observe transmitter po
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T Examples: See also: the 1 H, the
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T tupwr Description: See also: Tran
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U See also: NMR Spectroscopy User G
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U See also: NMR Spectroscopy User G
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U 608 Command and Parameter Referen
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V vast1d Applicability: Description
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V vf Description: Values: See also:
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V Examples: See also: Changing sele
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V See also: vnmr2sc('gcosy',2,3) nt
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V Examples: See also: file is the n
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V See also: NMR Spectroscopy User G
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V See also: NMR Spectroscopy User G
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V See also: VnmrJ Installation and
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W wp wp1 wp2 write writefid writepa
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W Values: Width, in mm. See also: N
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W wet Description: Flag to turn on
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W Examples: See also: before each o
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W Description: Arguments: See also:
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W See also: NMR Spectroscopy User G
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W wp2 Description: See also: Width
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W writefid Syntax: Description: Arg
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W See also: 'e' or 'exp' sets that
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W Arguments: Examples: See also:
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W 646 Command and Parameter Referen
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X xpolar1 xy xz xz2 Set up paramete
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X xmaddreq Applicability: Descripti
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X Description: See also: Find the n
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X Description: See also: A macro th
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X Description: See also: Sets up th
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Y Values: See also: If shimset is 1
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Z Arguments: Examples: See also: be
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Z See also: NMR Spectroscopy User G
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Z See also: NMR Spectroscopy User G
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Z 666 Command and Parameter Referen
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Index type of data processing, 447
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Index analysis of DEPT data, 70 car
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Index parameters in a parameter tre
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Index contour plot, 130 contour plo
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Index FDM program, running, 219 FID
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Index gradient calibration pulse se
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Index linear modulator power, 179,
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Index Oxford-Sorenson VT controller
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Index Hewlett-Packard, 648 maximum
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Index recording keyboard entries, 4
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Index create parameters, 401 filter
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Index t 2 dimension in, 343 tablib
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Index WETPWXCAL pulse sequence, 631
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VnmrJ Command and Parameter Reference VnmrJ 2.2D

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