VnmrJ Command and Parameter Reference VnmrJ 2.2D

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dot1 Set up a T 1 experiment (M)............................................................. 169 dotflag Display FID as connected dots (P) ................................................. 169 downsamp Downsampling factor applied after digital filtering (P).................. 170 dp Double precision (P) ....................................................................... 170 dpcon Display plotted contours (C)........................................................... 170 dpconn Display plotted contours without screen erase (C) ......................... 171 dpf Display peak frequencies over spectrum (C).................................. 171 dpir Display integral amplitudes below spectrum (C) ........................... 172 dpirn Display normalized integral amplitudes below spectrum (M)........ 172 dpiv Display integral values below spectrum (M).................................. 172 dpivn Display normalized integral values below spectrum (M)............... 173 dpl Default plot (M).............................................................................. 173 dpl_seqfil Sequence-specific default plot (M)................................................. 173 dplane Display a 3D plane (M) .................................................................. 174 dpr Default process (M) ........................................................................ 174 dpr_seqfil Sequence-specific default process (M) ........................................... 174 dprofile Display pulse excitation profile (M)............................................... 174 dproj Display a 3D plane projection (M) ................................................. 175 dps Display pulse sequence (C)............................................................. 175 dpwr Power level for first decoupler with linear amplifier (P)................ 176 dpwr2 Power level for second decoupler with linear amplifier (P) ........... 176 dpwr3 Power level for third decoupler with linear amplifier (P)............... 177 dpwr4 Power level for fourth decoupler amplifier (P)............................... 177 dpwrf First decoupler fine power (P) ........................................................ 178 dpwrf2 Second decoupler fine power (P).................................................... 178 dpwrf3 Third decoupler fine power (P)....................................................... 178 dpwrm First decoupler linear modulator power (P).................................... 179 dpwrm2 Second decoupler linear modulator power (P) ............................... 179 dpwrm3 Third decoupler linear modulator power (P) .................................. 179 Dqcosy Convert the parameter to a DQCOSY experiment (M) .................. 179 draw Draw line from current location to another location (C) ................ 179 dres Measure linewidth and digital resolution (C) ................................. 180 dres Tip-angle resolution for first decoupler (P) .................................... 180 dres2 Tip-angle resolution for second decoupler (P)................................ 181 dres3 Tip-angle resolution for third decoupler (P) ................................... 181 dres4 Tip-angle resolution for fourth decoupler (P)................................. 181 ds Display a spectrum (C) ................................................................... 182 ds2d Display 2D spectra in whitewash mode (C) ................................... 183 ds2dn Display 2D spectra in whitewash mode without screen erase (C).. 183 dsnarray Report statistical signal-to-noise for Cold Probes (M) ................... 184 dscale Display scale below spectrum or FID (C) ...................................... 184 dscoef Digital filter coefficients for downsampling (P)............................. 184 dseq Decoupler sequence for first decoupler (P) .................................... 185 dseq2 Decoupler sequence for second decoupler (P)................................ 185 dseq3 Decoupler sequence for third decoupler (P) ................................... 185 dseq4 Decoupler sequence for fourth decoupler (P) ................................. 186 dsfb Digital filter bandwidth for downsampling (P)............................... 186 dshape Display pulse shape or modulation pattern (M).............................. 186 dshapef Display last generated pulse shape (M) .......................................... 186 dshapei Display pulse shape or modulation pattern interactively (M)......... 187 dshim Display a shim “method” string (M)............................................... 187 dslsfrq Bandpass filter offset for downsampling (P) .................................. 187 dsn Measure signal-to-noise (C)............................................................ 188 dsnmax Calculate maximum signal-to-noise (M) ........................................ 188 dsp Display calculated spectrum (C)..................................................... 189 dsp Type of DSP for data acquisition (P) .............................................. 190 dsplanes Display a series of 3D planes (M) .................................................. 191 dsptype Type of DSP (P).............................................................................. 191 dss Display stacked spectra (C) ............................................................ 191 dssa Display stacked spectra automatically (C)...................................... 193 dssan Display stacked spectra automatically without erasing (C)............ 194 dssh Display stacked spectra horizontally (C) ........................................ 194 01-999380-00 A 0808 Command and Parameter Reference for VnmrJ 2.2D 9
dsshn Display stacked spectra horizontally without erasing (C) .............. 196 dssl Label a display of stacked spectra (M) ........................................... 196 dssn Display stacked spectra without screen erase (C)........................... 197 dsvast Display VAST data in a stacked 1D-NMR matrix format (M)....... 197 dsvast2d Display VAST data in a pseudo-2D format (M) ............................. 198 dsww Display spectra in whitewash mode (C) ......................................... 198 dtext Display a text file in graphics window (M) .................................... 198 dtrig Delay to wait for another trigger or acquire a spectrum (P) ........... 199 dutyc Duty cycle for homodecoupling (optional) (P)............................... 199 E e Eject sample (M)............................................................................. 201 eaddr Display Ethernet address (M,U) ..................................................... 202 ecc_on Turns on eddy current compensation for Cold Probes (M) ............ 202 ecc_off Turns off eddy current compensation for Cold Probes (M)............ 202 echo Display strings and parameter values in text window (C) .............. 202 edit Edit a file with user-selectable editor (M) ...................................... 202 eject Eject sample (M)............................................................................. 203 elist Display directory on remote VXR-style system (M,U).................. 203 email Email address (P) ........................................................................... 203 enter Enter sample information for automation run (M,U) ..................... 204 enterdialog Start a dialog window using enterexp file (M) ............................... 204 eread Transfer file from remote source (M,U) ......................................... 204 ernst Calculate the Ernst angle pulse (C)................................................. 205 errlog Display recent error messages (C) .................................................. 205 errloglen Number of lines in error message display (P)................................. 205 ewrite Transfer file to remote destination (M,U)....................................... 206 exec Execute a command (C).................................................................. 206 execpars Set up the exec parameters (M) ...................................................... 206 execplot Execute plotting macro (P) ............................................................. 206 execprep Execute prepare macro (P).............................................................. 207 execprescan Execute prescan macro (P) ............................................................. 207 execproc Execute processing macro (P)........................................................ 207 execprocess Execute processing macro (P)......................................................... 207 execsetup Execute setup macro (P) ................................................................. 207 exists Checks if parameter, file, or macro exists and file type (C............. 207 exit Call the vnmrexit command (M) .................................................... 210 exp Find exponential value of a number (C) ......................................... 210 expactive Determine if experiment has active acquisition (C) ....................... 210 expfit Make least-squares fit to polynomial or exponential curve (U) ..... 211 expl Display exponential or polynomial curves (C) ............................... 212 expladd Add another diffusion analysis to current display (M) ................... 213 explib Display experiment library (M) ...................................................... 214 explist Display current experiment chain and approx. time for each (M).. 214 explog Display log file for experiment (M)................................................ 214 exptime Display experiment time (C)........................................................... 214 F f Set display parameters to full spectrum (C).................................... 216 f19 Automated fluorine acquisition (M) ............................................... 216 f19p Process 1D fluorine spectra (M) ..................................................... 217 f1coef Coefficient to construct F1 interferogram (P)................................. 217 f2coef Coefficient to construct F2 interferogram (P)................................. 218 fattn Fine attenuator (P) .......................................................................... 218 fb Filter bandwidth (P)........................................................................ 218 fbc Apply baseline correction for each spectrum in an array (M) ........ 219 fdm1 Set, write 1D FDM parameters, run FDM (M)............................... 219 fiddc3d 3D time-domain dc correction (P) .................................................. 220 fiddle Perform reference deconvolution (M) ............................................ 220 fiddled Perform reference deconvolution subtracting alternate FIDs (C)... 221 fiddleu Perform reference deconvolution subtracting successive FIDs (C) 222 10 Command and Parameter Reference for VnmrJ 2.2D 01-999380-00 A 0808
Page 1 and 2: VnmrJ Command and Parameter Referen
Page 3 and 4: VnmrJ Command and Parameter Referen
Page 5 and 6: 2 Command and Parameter Reference f
Page 7 and 8: arraydim Dimension of experiment (P
Page 9 and 10: copy Copy a file (C) ..............
Page 11: dglc Display group of LC-NMR parame
Page 15 and 16: gcal Gradient calibration constant
Page 17 and 18: homo3 Homodecoupling control for th
Page 19 and 20: loadcolors Load colors for graphics
Page 21 and 22: Noesy Convert the parameter to a NO
Page 23 and 24: plcosy Plot COSY- and NOESY-type sp
Page 25 and 26: R r Recall display parameter set (M
Page 27 and 28: seqfil Pulse sequence name (P).....
Page 29 and 30: sqsavestudy Macro to save study par
Page 31 and 32: updaterev Update after installing n
Page 33 and 34: xm1 Utility macro for study queue e
Page 35 and 36: 32 Command and Parameter Reference
Page 37 and 38: Notational Conventions md(to_exp) n
Page 39 and 40: A aph aph0 aphb aphx appdirs appmod
Page 41 and 42: A See also: parent (nested) macros
Page 43 and 44: A acosy Syntax: Description: See al
Page 45 and 46: A spin sw vp vs wp Sample spin rate
Page 47 and 48: A window should open automatically
Page 49 and 50: A See also: 595. Sample failed to i
Page 51 and 52: A spadd sub Add current spectrum to
Page 53 and 54: A Examples: See also: • 'ss' spec
Page 55 and 56: A Examples: See also: adept adept('
Page 57 and 58: A lock sample Submit an Autolock ex
Page 59 and 60: A Arguments: (3) Line containing an
Page 61 and 62: A See also: VnmrJ User Programming
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A appmode Description: Values: Appl
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A asin Find arc sine of number (C)
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A Arguments: Examples: When called
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A go_ load loc lock method sample s
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A Aufindz0 Automatic adjustment of
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A Values: 'y' indicates automation
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A Description: Arguments: Examples:
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A Examples: Examples: See also: >9
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A See also: NMR Spectroscopy User G
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A Examples: See also: number_argume
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A dscale pscale Display scale below
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B Arguments: Examples: See also: me
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B This command should rarely be use
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B See also: NMR Spectroscopy User G
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B 88 Command and Parameter Referenc
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C contact_time MAS cross-polarizati
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C Description: See also: Calculates
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C See also: 127 for imaging attenua
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C See also: NMR Spectroscopy User G
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C Description: checkstring is used
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C clfreq Description: See also: Cal
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C it runs in interactive mode; if n
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C Arguments: Examples: See also:
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C Description: Arguments: See also:
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C Examples: See also: • -dxxx, wh
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C Dqcosy relayh Set up parameters f
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C Related: apptype Application type
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C cr2 Description: See also: Cursor
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C crl Description: See also: Clear
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C See also: NMR Spectroscopy User G
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C 120 Command and Parameter Referen
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D delta Cursor difference in direct
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D dosygamma dosytimecubed dot1 dotf
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D See also: If d0='n', the software
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D daslp Description: Values: See al
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D dc Description: See also: Calcula
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D Arguments: Examples: See also: ds
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D ft2d imconi wft2d Fourier transfo
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D Syntax: Description: ddrcr= Sets
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D dm2 dm3 Decoupler mode for second
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D Description: Arguments: Examples:
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D deptproc Description: See also: P
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D dfid Syntax: Description: See als
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D ho plfid pfww sc vo vpf wc Horizo
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D Arguments: Examples: See also: te
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D See also: NMR Spectroscopy User G
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D Examples: in these directories. T
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D nli z Find integral values (C) Ad
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D Values: See also: 5 Hz to 2 MHz i
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D Description: Arguments: Examples:
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D See also: outside of the acqi pro
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D dnode Applicability: Description:
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D Examples: See also: max_width is
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D Values: See also: deltaf (if the
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D See also: dpf('top','noll') dpf('
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D dplane Syntax: Description: Argum
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D Arguments: See also: The pulse pa
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D CAUTION: See also: Decoupling pow
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D Examples: See also: • 'xor','no
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D ds Syntax: Description: Arguments
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D Examples: See also: ds2dn ds2dn('
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D dseq4 Applicability: Description:
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D Values: See also: the digital fil
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D dsp Applicability: Description: V
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D Arguments: Examples: See also: Th
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D step is the increment for the spe
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D dsww ft1d ho intmod pl plww sc sc
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D dsvast2d Display VAST data in a p
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D homorof3 tn Delay between setting
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E See also: NMR Spectroscopy User G
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E enter Applicability: Syntax: Desc
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E ewrite Applicability: Syntax: Des
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E keyword 'maclib' 'command' 'ascii
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E exit Description: CAUTION: Call t
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E Arguments: Examples: See also: (3
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E Syntax: Description: Arguments: E
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F foldcc foldj foldt fontselect for
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F make3dcoef par2d Make 3D coeffici
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F Examples: See also: v1, v2... is
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F fiddleu Perform reference deconvo
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F Arguments: Examples: See also: st
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F slfreq sp usemark wp Measured lin
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F Arguments: Examples: See also: nf
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F focus Description: See also: Send
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F See also: format($snum,3,1):$rval
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F Examples: See also: type of tree
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F Examples: See also: start is the
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F See also: NMR Spectroscopy User G
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F • 'noop' is a keyword to not pe
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F See also: • 'ni2' is a keyword
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F Arguments: ft3d Entered from UNIX
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F make3dcoef ptspec3d set3dproc spe
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G gHSQC_d213 Ghsqctoxy gilson gin g
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G examined for signal level. If the
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G See also: Be aware that if an old
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G Examples: See also: extension is
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G Examples: See also: • 'xall' is
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G Arguments: Examples: See also: A
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G See also: detected dimension. Thi
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G gilson Syntax: Description: See a
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G Values: 'n' disable spinning duri
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G gmax Description: See also: Maxim
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G go seqfil usergo Submit experimen
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G grayctr Gray level window adjustm
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G gtnroesy Applicability: Descripti
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G 274 Command and Parameter Referen
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H homo2 homo3 homo4 HOMODEC homo2d
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H See also: j2r is the reduced coup
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H Examples: See also: hcdept hcdept
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H homo homorof1 homorof2 homorof3 t
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H Examples: See also: hdwshimlist='
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H HMQC_d2 Description: Set up param
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H Related: dm3 Decoupler mode for t
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hoult Set parameters alfa and rof2
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H hsqctoxySE Description: Set up pa
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H htss1 Description: Values: See al
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H 296 Command and Parameter Referen
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I ihwinfo Syntax: Description: Argu
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I Examples: See also: dir_flag imag
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I See also: fn. The insref paramete
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I See also: NMR Spectroscopy User G
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I category type gettype returns str
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I 308 Command and Parameter Referen
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J Arguments: Examples: See also: ex
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J jviewports Viewport layout (P) De
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K See also: NMR Spectroscopy User G
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K 316 Command and Parameter Referen
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L lp1 lp2 lpalg lpalg1 lpalg2 lpext
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L Values: See also: A positive valu
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L legrelay Description: Values: See
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L See also: in Hz, analogous to sfr
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L Examples: See also: • 'comment'
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L Examples: See also: ln(.5) ln(val
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L Values: See also: 1, 2, 3, or 4 (
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L See also: User Guide: Solid-State
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L See also: lookup('delimiter',' ,\
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L strtlp strtext Starting point for
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L lpfilt ni LP coefficients to calc
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L lpprint Description: Values: See
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L Arguments: Examples: directory is
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L lsfrq1 Description: Values: Frequ
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L 346 Command and Parameter Referen
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M movetof mp mqcosy mrev8 mrfb mref
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M Arguments: Examples: See also: ov
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M make3dcoef Syntax: Description: A
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M element_number and format argumen
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M Description: Arguments: (5) mark
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M Values: See also: Note that the V
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M mf Syntax: Description: Arguments
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M mfopen mftrace rfblk rftrace Memo
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M mlabel Description: See also: Men
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M Examples: See also: mp(4) mp(2,3)
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M Description: Examples: An array o
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M CAUTION: See also: One special ca
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N newmenu Syntax: Description: Argu
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N ni3 Description: See also: Number
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N Arguments: Examples: See also: 'p
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N r6 returns the percentage channel
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N ntrig Applicability: Description:
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N 382 Command and Parameter Referen
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O Arguments: Examples: See also: %d
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O paros sw Create additional parame
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O 'n' causes normal acquisition to
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P pboxpar pboxrst pboxunits pcon pc
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P prescan_CoilTable prescan_tn prin
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P Description: Values: See also: Sp
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P See also: The pa1 command is only
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P page Description: Name of page (P
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P Description: See also: Creates th
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P See also: The quality of filterin
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P See also: User Programming Relate
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P See also: NMR Spectroscopy User G
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P pboxpar Syntax: Description: Argu
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P See also: User Programming Relate
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P Values: See also: A three-charact
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P Examples: See also: reference_reg
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P phase Syntax: Description: Argume
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P phfid1 Description: Values: See a
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P pintvast Applicability: Syntax: D
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P ft1d ho intmod plww pshr pslw sc
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P plate_glue Applicability: Descrip
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P vpf wc Current vertical position
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P • Negative or positive contours
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P Related: protune Macro to start P
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P plothiresprep High resolution plo
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P p1 pw First pulse width (P) Pulse
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P Examples: See also: pprofile ppro
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P Examples: str is a string that ca
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P See also: VnmrJ User Programming
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P See also: proc1d does not work wi
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P Description: Arguments: Examples:
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P Third case: exec — keyword that
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P Examples: See also: C3 sets lb1=-
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P See also: searched for when an ex
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P sw sw1 sw2 Spectral width in dire
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P See also: point are used in the s
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P Arguments: Examples: See also: fi
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P 466 Command and Parameter Referen
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Q ? Display the value of an individ
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R rfband rfblk rfchannel rfchtype r
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R See also: experiment with the rt
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R Examples: The par1 and par2 param
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R Examples: See also: readhw('z1c',
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R Description: Produces 2D images (
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R record Syntax: Description: Argum
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R Related: reff1 Reference f2 Indir
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R See also: if it is a heteronuclea
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R the current tree, if it exists th
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R vnmrjcmd() wp Commands to invoke
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R Arguments: Examples: See also: us
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R Values: See also: The values of r
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R rfp Description: Values: See also
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R rfwg Description: Values: See als
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R rl rl2 scalesw1 sfrq Set ref. lin
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R See also: NMR Spectroscopy User G
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R See also: NMR Spectroscopy User G
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R Examples: See also: noabort — k
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S setcolor setdecpars setdec2pars s
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S spincad Run SpinCAD program (C) s
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S Description: Saves a copy of the
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S See also: NMR Spectroscopy User G
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S sd2 Applicability: Description: S
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S Examples: See also: • 'f1f3', '
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S Arguments: Examples: See also: se
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S See also: initialization, etc.).
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S See also: User Programming Relate
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S See also: Pulsed Field Gradient M
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S Arguments: Examples: Syntax 5 eje
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S Step Value Parameter setting Argu
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S sw rof2 Spectral width in directl
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S sw tpwr Spectral width in directl
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S Arguments: Examples: See also: re
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S See also: flushing mode. In the l
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S Examples: See also: trev time rev
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S See also: (e.g.: multiselective)
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S See also: and radial shims x1, y1
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S Arguments: See also: shift sets t
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S testsn testct Test signal-to-nois
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S spadd Syntax: Description: Argume
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S See also: If the spinning speed i
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S dsp initialize_iterate iterate ni
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S sqdir sqname studyid Svfname Stud
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S ss Steady-state transients (P) De
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S ssfilter sslsfrq ssntaps wft Full
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S shim wshim Submit an Autoshim exp
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S See also: sub('new') sub('trace',
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S Examples: See also: where numgray
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S Percent sign (%) substitution spe
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S Examples: See also: The svs comma
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S See also: variable evolution time
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T tpwrm Observe transmitter linear
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T Arguments: Examples: See also: 2D
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T Arguments: Examples: See also: 1
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T Syntax: Values: status of the cur
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T textis Syntax: Description: Argum
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T nt sw1 sw2 Number of transients (
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T tnroesy Description: See also: Se
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T tpwr tpwrm Observe transmitter po
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T Examples: See also: the 1 H, the
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T tupwr Description: See also: Tran
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U See also: NMR Spectroscopy User G
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U See also: NMR Spectroscopy User G
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U 608 Command and Parameter Referen
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V vast1d Applicability: Description
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V vf Description: Values: See also:
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V Examples: See also: Changing sele
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V See also: vnmr2sc('gcosy',2,3) nt
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V Examples: See also: file is the n
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V See also: NMR Spectroscopy User G
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V See also: NMR Spectroscopy User G
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V See also: VnmrJ Installation and
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W wp wp1 wp2 write writefid writepa
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W Values: Width, in mm. See also: N
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W wet Description: Flag to turn on
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W Examples: See also: before each o
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W Description: Arguments: See also:
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W See also: NMR Spectroscopy User G
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W wp2 Description: See also: Width
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W writefid Syntax: Description: Arg
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W See also: 'e' or 'exp' sets that
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W Arguments: Examples: See also:
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W 646 Command and Parameter Referen
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X xpolar1 xy xz xz2 Set up paramete
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X xmaddreq Applicability: Descripti
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X Description: See also: Find the n
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X Description: See also: A macro th
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X Description: See also: Sets up th
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Y Values: See also: If shimset is 1
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Z Arguments: Examples: See also: be
Page 665 and 666:
Z See also: NMR Spectroscopy User G
Page 667 and 668:
Z See also: NMR Spectroscopy User G
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Z 666 Command and Parameter Referen
Page 671 and 672:
Index type of data processing, 447
Page 673 and 674:
Index analysis of DEPT data, 70 car
Page 675 and 676:
Index parameters in a parameter tre
Page 677 and 678:
Index contour plot, 130 contour plo
Page 679 and 680:
Index FDM program, running, 219 FID
Page 681 and 682:
Index gradient calibration pulse se
Page 683 and 684:
Index linear modulator power, 179,
Page 685 and 686:
Index Oxford-Sorenson VT controller
Page 687 and 688:
Index Hewlett-Packard, 648 maximum
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Index recording keyboard entries, 4
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Index create parameters, 401 filter
Page 693 and 694:
Index t 2 dimension in, 343 tablib
Page 695:
Index WETPWXCAL pulse sequence, 631
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VnmrJ Command and Parameter Reference VnmrJ 2.2D

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