VnmrJ Command and Parameter Reference VnmrJ 2.2D

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Contents Overview Notational Conventions . . . . . . . . . . . . . . . . . . . . . . . . . . 33 A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 35 B . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 81 C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 89 D . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 121 E . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 201 F . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 215 G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 247 H . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 275 I . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 297 J . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 309 K . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 313 L . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 317 M . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 347 N . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 371 O . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 383 P . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 389 Q . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 467 R . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 469 S . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 505 T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 583 U . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 603 V . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 609 W . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 625 X . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 647 Y . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 657 Z . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 659 Index ................................................................................................................ 667 01-999380-00 A 0808 Command and Parameter Reference for VnmrJ 2.2D 1
2 Command and Parameter Reference for VnmrJ 2.2D 01-999380-00 A 0808
Page 1 and 2: VnmrJ Command and Parameter Referen
Page 3: VnmrJ Command and Parameter Referen
Page 7 and 8: arraydim Dimension of experiment (P
Page 9 and 10: copy Copy a file (C) ..............
Page 11 and 12: dglc Display group of LC-NMR parame
Page 13 and 14: dsshn Display stacked spectra horiz
Page 15 and 16: gcal Gradient calibration constant
Page 17 and 18: homo3 Homodecoupling control for th
Page 19 and 20: loadcolors Load colors for graphics
Page 21 and 22: Noesy Convert the parameter to a NO
Page 23 and 24: plcosy Plot COSY- and NOESY-type sp
Page 25 and 26: R r Recall display parameter set (M
Page 27 and 28: seqfil Pulse sequence name (P).....
Page 29 and 30: sqsavestudy Macro to save study par
Page 31 and 32: updaterev Update after installing n
Page 33 and 34: xm1 Utility macro for study queue e
Page 35 and 36: 32 Command and Parameter Reference
Page 37 and 38: Notational Conventions md(to_exp) n
Page 39 and 40: A aph aph0 aphb aphx appdirs appmod
Page 41 and 42: A See also: parent (nested) macros
Page 43 and 44: A acosy Syntax: Description: See al
Page 45 and 46: A spin sw vp vs wp Sample spin rate
Page 47 and 48: A window should open automatically
Page 49 and 50: A See also: 595. Sample failed to i
Page 51 and 52: A spadd sub Add current spectrum to
Page 53 and 54: A Examples: See also: • 'ss' spec
Page 55 and 56:
A Examples: See also: adept adept('
Page 57 and 58:
A lock sample Submit an Autolock ex
Page 59 and 60:
A Arguments: (3) Line containing an
Page 61 and 62:
A See also: VnmrJ User Programming
Page 63 and 64:
A appmode Description: Values: Appl
Page 65 and 66:
A asin Find arc sine of number (C)
Page 67 and 68:
A Arguments: Examples: When called
Page 69 and 70:
A go_ load loc lock method sample s
Page 71 and 72:
A Aufindz0 Automatic adjustment of
Page 73 and 74:
A Values: 'y' indicates automation
Page 75 and 76:
A Description: Arguments: Examples:
Page 77 and 78:
A Examples: Examples: See also: >9
Page 79 and 80:
A See also: NMR Spectroscopy User G
Page 81 and 82:
A Examples: See also: number_argume
Page 83 and 84:
A dscale pscale Display scale below
Page 85 and 86:
B Arguments: Examples: See also: me
Page 87 and 88:
B This command should rarely be use
Page 89 and 90:
B See also: NMR Spectroscopy User G
Page 91 and 92:
B 88 Command and Parameter Referenc
Page 93 and 94:
C contact_time MAS cross-polarizati
Page 95 and 96:
C Description: See also: Calculates
Page 97 and 98:
C See also: 127 for imaging attenua
Page 99 and 100:
C See also: NMR Spectroscopy User G
Page 101 and 102:
C Description: checkstring is used
Page 103 and 104:
C clfreq Description: See also: Cal
Page 105 and 106:
C it runs in interactive mode; if n
Page 107 and 108:
C Arguments: Examples: See also:
Page 109 and 110:
C Description: Arguments: See also:
Page 111 and 112:
C Examples: See also: • -dxxx, wh
Page 113 and 114:
C Dqcosy relayh Set up parameters f
Page 115 and 116:
C Related: apptype Application type
Page 117 and 118:
C cr2 Description: See also: Cursor
Page 119 and 120:
C crl Description: See also: Clear
Page 121 and 122:
C See also: NMR Spectroscopy User G
Page 123 and 124:
C 120 Command and Parameter Referen
Page 125 and 126:
D delta Cursor difference in direct
Page 127 and 128:
D dosygamma dosytimecubed dot1 dotf
Page 129 and 130:
D See also: If d0='n', the software
Page 131 and 132:
D daslp Description: Values: See al
Page 133 and 134:
D dc Description: See also: Calcula
Page 135 and 136:
D Arguments: Examples: See also: ds
Page 137 and 138:
D ft2d imconi wft2d Fourier transfo
Page 139 and 140:
D Syntax: Description: ddrcr= Sets
Page 141 and 142:
D dm2 dm3 Decoupler mode for second
Page 143 and 144:
D Description: Arguments: Examples:
Page 145 and 146:
D deptproc Description: See also: P
Page 147 and 148:
D dfid Syntax: Description: See als
Page 149 and 150:
D ho plfid pfww sc vo vpf wc Horizo
Page 151 and 152:
D Arguments: Examples: See also: te
Page 153 and 154:
D See also: NMR Spectroscopy User G
Page 155 and 156:
D Examples: in these directories. T
Page 157 and 158:
Page 159 and 160:
D nli z Find integral values (C) Ad
Page 161 and 162:
D Values: See also: 5 Hz to 2 MHz i
Page 163 and 164:
D Description: Arguments: Examples:
Page 165 and 166:
D See also: outside of the acqi pro
Page 167 and 168:
Page 169 and 170:
D dnode Applicability: Description:
Page 171 and 172:
D Examples: See also: max_width is
Page 173 and 174:
D Values: See also: deltaf (if the
Page 175 and 176:
D See also: dpf('top','noll') dpf('
Page 177 and 178:
D dplane Syntax: Description: Argum
Page 179 and 180:
D Arguments: See also: The pulse pa
Page 181 and 182:
D CAUTION: See also: Decoupling pow
Page 183 and 184:
D Examples: See also: • 'xor','no
Page 185 and 186:
D ds Syntax: Description: Arguments
Page 187 and 188:
D Examples: See also: ds2dn ds2dn('
Page 189 and 190:
D dseq4 Applicability: Description:
Page 191 and 192:
D Values: See also: the digital fil
Page 193 and 194:
D dsp Applicability: Description: V
Page 195 and 196:
D Arguments: Examples: See also: Th
Page 197 and 198:
D step is the increment for the spe
Page 199 and 200:
D dsww ft1d ho intmod pl plww sc sc
Page 201 and 202:
D dsvast2d Display VAST data in a p
Page 203 and 204:
D homorof3 tn Delay between setting
Page 205 and 206:
E See also: NMR Spectroscopy User G
Page 207 and 208:
E enter Applicability: Syntax: Desc
Page 209 and 210:
E ewrite Applicability: Syntax: Des
Page 211 and 212:
E keyword 'maclib' 'command' 'ascii
Page 213 and 214:
E exit Description: CAUTION: Call t
Page 215 and 216:
E Arguments: Examples: See also: (3
Page 217 and 218:
E Syntax: Description: Arguments: E
Page 219 and 220:
F foldcc foldj foldt fontselect for
Page 221 and 222:
F make3dcoef par2d Make 3D coeffici
Page 223 and 224:
F Examples: See also: v1, v2... is
Page 225 and 226:
F fiddleu Perform reference deconvo
Page 227 and 228:
F Arguments: Examples: See also: st
Page 229 and 230:
F slfreq sp usemark wp Measured lin
Page 231 and 232:
F Arguments: Examples: See also: nf
Page 233 and 234:
F focus Description: See also: Send
Page 235 and 236:
F See also: format($snum,3,1):$rval
Page 237 and 238:
F Examples: See also: type of tree
Page 239 and 240:
F Examples: See also: start is the
Page 241 and 242:
F See also: NMR Spectroscopy User G
Page 243 and 244:
F • 'noop' is a keyword to not pe
Page 245 and 246:
F See also: • 'ni2' is a keyword
Page 247 and 248:
F Arguments: ft3d Entered from UNIX
Page 249 and 250:
F make3dcoef ptspec3d set3dproc spe
Page 251 and 252:
G gHSQC_d213 Ghsqctoxy gilson gin g
Page 253 and 254:
G examined for signal level. If the
Page 255 and 256:
G See also: Be aware that if an old
Page 257 and 258:
G Examples: See also: extension is
Page 259 and 260:
G Examples: See also: • 'xall' is
Page 261 and 262:
G Arguments: Examples: See also: A
Page 263 and 264:
G See also: detected dimension. Thi
Page 265 and 266:
G gilson Syntax: Description: See a
Page 267 and 268:
G Values: 'n' disable spinning duri
Page 269 and 270:
G gmax Description: See also: Maxim
Page 271 and 272:
G go seqfil usergo Submit experimen
Page 273 and 274:
G grayctr Gray level window adjustm
Page 275 and 276:
G gtnroesy Applicability: Descripti
Page 277 and 278:
G 274 Command and Parameter Referen
Page 279 and 280:
H homo2 homo3 homo4 HOMODEC homo2d
Page 281 and 282:
H See also: j2r is the reduced coup
Page 283 and 284:
H Examples: See also: hcdept hcdept
Page 285 and 286:
H homo homorof1 homorof2 homorof3 t
Page 287 and 288:
H Examples: See also: hdwshimlist='
Page 289 and 290:
H HMQC_d2 Description: Set up param
Page 291 and 292:
H Related: dm3 Decoupler mode for t
Page 293 and 294:
hoult Set parameters alfa and rof2
Page 295 and 296:
H hsqctoxySE Description: Set up pa
Page 297 and 298:
H htss1 Description: Values: See al
Page 299 and 300:
H 296 Command and Parameter Referen
Page 301 and 302:
I ihwinfo Syntax: Description: Argu
Page 303 and 304:
I Examples: See also: dir_flag imag
Page 305 and 306:
I See also: fn. The insref paramete
Page 307 and 308:
I See also: NMR Spectroscopy User G
Page 309 and 310:
I category type gettype returns str
Page 311 and 312:
I 308 Command and Parameter Referen
Page 313 and 314:
J Arguments: Examples: See also: ex
Page 315 and 316:
J jviewports Viewport layout (P) De
Page 317 and 318:
K See also: NMR Spectroscopy User G
Page 319 and 320:
K 316 Command and Parameter Referen
Page 321 and 322:
L lp1 lp2 lpalg lpalg1 lpalg2 lpext
Page 323 and 324:
L Values: See also: A positive valu
Page 325 and 326:
L legrelay Description: Values: See
Page 327 and 328:
L See also: in Hz, analogous to sfr
Page 329 and 330:
L Examples: See also: • 'comment'
Page 331 and 332:
L Examples: See also: ln(.5) ln(val
Page 333 and 334:
L Values: See also: 1, 2, 3, or 4 (
Page 335 and 336:
L See also: User Guide: Solid-State
Page 337 and 338:
L See also: lookup('delimiter',' ,\
Page 339 and 340:
L strtlp strtext Starting point for
Page 341 and 342:
L lpfilt ni LP coefficients to calc
Page 343 and 344:
L lpprint Description: Values: See
Page 345 and 346:
L Arguments: Examples: directory is
Page 347 and 348:
L lsfrq1 Description: Values: Frequ
Page 349 and 350:
L 346 Command and Parameter Referen
Page 351 and 352:
M movetof mp mqcosy mrev8 mrfb mref
Page 353 and 354:
M Arguments: Examples: See also: ov
Page 355 and 356:
M make3dcoef Syntax: Description: A
Page 357 and 358:
M element_number and format argumen
Page 359 and 360:
M Description: Arguments: (5) mark
Page 361 and 362:
M Values: See also: Note that the V
Page 363 and 364:
M mf Syntax: Description: Arguments
Page 365 and 366:
M mfopen mftrace rfblk rftrace Memo
Page 367 and 368:
M mlabel Description: See also: Men
Page 369 and 370:
M Examples: See also: mp(4) mp(2,3)
Page 371 and 372:
M Description: Examples: An array o
Page 373 and 374:
M CAUTION: See also: One special ca
Page 375 and 376:
N newmenu Syntax: Description: Argu
Page 377 and 378:
N ni3 Description: See also: Number
Page 379 and 380:
N Arguments: Examples: See also: 'p
Page 381 and 382:
N r6 returns the percentage channel
Page 383 and 384:
N ntrig Applicability: Description:
Page 385 and 386:
N 382 Command and Parameter Referen
Page 387 and 388:
O Arguments: Examples: See also: %d
Page 389 and 390:
O paros sw Create additional parame
Page 391 and 392:
O 'n' causes normal acquisition to
Page 393 and 394:
P pboxpar pboxrst pboxunits pcon pc
Page 395 and 396:
P prescan_CoilTable prescan_tn prin
Page 397 and 398:
P Description: Values: See also: Sp
Page 399 and 400:
P See also: The pa1 command is only
Page 401 and 402:
P page Description: Name of page (P
Page 403 and 404:
P Description: See also: Creates th
Page 405 and 406:
P See also: The quality of filterin
Page 407 and 408:
P See also: User Programming Relate
Page 409 and 410:
P See also: NMR Spectroscopy User G
Page 411 and 412:
Page 413 and 414:
P pboxpar Syntax: Description: Argu
Page 415 and 416:
P See also: User Programming Relate
Page 417 and 418:
P Values: See also: A three-charact
Page 419 and 420:
P Examples: See also: reference_reg
Page 421 and 422:
P phase Syntax: Description: Argume
Page 423 and 424:
P phfid1 Description: Values: See a
Page 425 and 426:
P pintvast Applicability: Syntax: D
Page 427 and 428:
P ft1d ho intmod plww pshr pslw sc
Page 429 and 430:
P plate_glue Applicability: Descrip
Page 431 and 432:
P vpf wc Current vertical position
Page 433 and 434:
P • Negative or positive contours
Page 435 and 436:
P Related: protune Macro to start P
Page 437 and 438:
P plothiresprep High resolution plo
Page 439 and 440:
Page 441 and 442:
Page 443 and 444:
P p1 pw First pulse width (P) Pulse
Page 445 and 446:
P Examples: See also: pprofile ppro
Page 447 and 448:
P Examples: str is a string that ca
Page 449 and 450:
P See also: VnmrJ User Programming
Page 451 and 452:
P See also: proc1d does not work wi
Page 453 and 454:
P Description: Arguments: Examples:
Page 455 and 456:
P Third case: exec — keyword that
Page 457 and 458:
P Examples: See also: C3 sets lb1=-
Page 459 and 460:
P See also: searched for when an ex
Page 461 and 462:
P sw sw1 sw2 Spectral width in dire
Page 463 and 464:
Page 465 and 466:
P See also: point are used in the s
Page 467 and 468:
P Arguments: Examples: See also: fi
Page 469 and 470:
P 466 Command and Parameter Referen
Page 471 and 472:
Q ? Display the value of an individ
Page 473 and 474:
R rfband rfblk rfchannel rfchtype r
Page 475 and 476:
R See also: experiment with the rt
Page 477 and 478:
R Examples: The par1 and par2 param
Page 479 and 480:
R Examples: See also: readhw('z1c',
Page 481 and 482:
R Description: Produces 2D images (
Page 483 and 484:
R record Syntax: Description: Argum
Page 485 and 486:
R Related: reff1 Reference f2 Indir
Page 487 and 488:
R See also: if it is a heteronuclea
Page 489 and 490:
R the current tree, if it exists th
Page 491 and 492:
R vnmrjcmd() wp Commands to invoke
Page 493 and 494:
R Arguments: Examples: See also: us
Page 495 and 496:
R Values: See also: The values of r
Page 497 and 498:
R rfp Description: Values: See also
Page 499 and 500:
R rfwg Description: Values: See als
Page 501 and 502:
R rl rl2 scalesw1 sfrq Set ref. lin
Page 503 and 504:
R See also: NMR Spectroscopy User G
Page 505 and 506:
R See also: NMR Spectroscopy User G
Page 507 and 508:
R Examples: See also: noabort — k
Page 509 and 510:
S setcolor setdecpars setdec2pars s
Page 511 and 512:
S spincad Run SpinCAD program (C) s
Page 513 and 514:
S Description: Saves a copy of the
Page 515 and 516:
S See also: NMR Spectroscopy User G
Page 517 and 518:
Page 519 and 520:
S sd2 Applicability: Description: S
Page 521 and 522:
S Examples: See also: • 'f1f3', '
Page 523 and 524:
S Arguments: Examples: See also: se
Page 525 and 526:
S See also: initialization, etc.).
Page 527 and 528:
S See also: User Programming Relate
Page 529 and 530:
S See also: Pulsed Field Gradient M
Page 531 and 532:
S Arguments: Examples: Syntax 5 eje
Page 533 and 534:
S Step Value Parameter setting Argu
Page 535 and 536:
S sw rof2 Spectral width in directl
Page 537 and 538:
S sw tpwr Spectral width in directl
Page 539 and 540:
S Arguments: Examples: See also: re
Page 541 and 542:
S See also: flushing mode. In the l
Page 543 and 544:
Page 545 and 546:
S Examples: See also: trev time rev
Page 547 and 548:
S See also: (e.g.: multiselective)
Page 549 and 550:
S See also: and radial shims x1, y1
Page 551 and 552:
Page 553 and 554:
S Arguments: See also: shift sets t
Page 555 and 556:
S testsn testct Test signal-to-nois
Page 557 and 558:
S spadd Syntax: Description: Argume
Page 559 and 560:
Page 561 and 562:
S See also: If the spinning speed i
Page 563 and 564:
S dsp initialize_iterate iterate ni
Page 565 and 566:
Page 567 and 568:
S sqdir sqname studyid Svfname Stud
Page 569 and 570:
S ss Steady-state transients (P) De
Page 571 and 572:
S ssfilter sslsfrq ssntaps wft Full
Page 573 and 574:
S shim wshim Submit an Autoshim exp
Page 575 and 576:
Page 577 and 578:
S See also: sub('new') sub('trace',
Page 579 and 580:
S Examples: See also: where numgray
Page 581 and 582:
S Percent sign (%) substitution spe
Page 583 and 584:
S Examples: See also: The svs comma
Page 585 and 586:
S See also: variable evolution time
Page 587 and 588:
T tpwrm Observe transmitter linear
Page 589 and 590:
T Arguments: Examples: See also: 2D
Page 591 and 592:
T Arguments: Examples: See also: 1
Page 593 and 594:
T Syntax: Values: status of the cur
Page 595 and 596:
T textis Syntax: Description: Argum
Page 597 and 598:
T nt sw1 sw2 Number of transients (
Page 599 and 600:
T tnroesy Description: See also: Se
Page 601 and 602:
T tpwr tpwrm Observe transmitter po
Page 603 and 604:
T Examples: See also: the 1 H, the
Page 605 and 606:
T tupwr Description: See also: Tran
Page 607 and 608:
U See also: NMR Spectroscopy User G
Page 609 and 610:
U See also: NMR Spectroscopy User G
Page 611 and 612:
U 608 Command and Parameter Referen
Page 613 and 614:
V vast1d Applicability: Description
Page 615 and 616:
V vf Description: Values: See also:
Page 617 and 618:
V Examples: See also: Changing sele
Page 619 and 620:
V See also: vnmr2sc('gcosy',2,3) nt
Page 621 and 622:
V Examples: See also: file is the n
Page 623 and 624:
V See also: NMR Spectroscopy User G
Page 625 and 626:
V See also: NMR Spectroscopy User G
Page 627 and 628:
V See also: VnmrJ Installation and
Page 629 and 630:
W wp wp1 wp2 write writefid writepa
Page 631 and 632:
W Values: Width, in mm. See also: N
Page 633 and 634:
W wet Description: Flag to turn on
Page 635 and 636:
W Examples: See also: before each o
Page 637 and 638:
W Description: Arguments: See also:
Page 639 and 640:
W See also: NMR Spectroscopy User G
Page 641 and 642:
W wp2 Description: See also: Width
Page 643 and 644:
W writefid Syntax: Description: Arg
Page 645 and 646:
W See also: 'e' or 'exp' sets that
Page 647 and 648:
W Arguments: Examples: See also:
Page 649 and 650:
W 646 Command and Parameter Referen
Page 651 and 652:
X xpolar1 xy xz xz2 Set up paramete
Page 653 and 654:
X xmaddreq Applicability: Descripti
Page 655 and 656:
X Description: See also: Find the n
Page 657 and 658:
X Description: See also: A macro th
Page 659 and 660:
X Description: See also: Sets up th
Page 661 and 662:
Y Values: See also: If shimset is 1
Page 663 and 664:
Z Arguments: Examples: See also: be
Page 665 and 666:
Z See also: NMR Spectroscopy User G
Page 667 and 668:
Z See also: NMR Spectroscopy User G
Page 669 and 670:
Z 666 Command and Parameter Referen
Page 671 and 672:
Index type of data processing, 447
Page 673 and 674:
Index analysis of DEPT data, 70 car
Page 675 and 676:
Index parameters in a parameter tre
Page 677 and 678:
Index contour plot, 130 contour plo
Page 679 and 680:
Index FDM program, running, 219 FID
Page 681 and 682:
Index gradient calibration pulse se
Page 683 and 684:
Index linear modulator power, 179,
Page 685 and 686:
Index Oxford-Sorenson VT controller
Page 687 and 688:
Index Hewlett-Packard, 648 maximum
Page 689 and 690:
Index recording keyboard entries, 4
Page 691 and 692:
Index create parameters, 401 filter
Page 693 and 694:
Index t 2 dimension in, 343 tablib
Page 695:
Index WETPWXCAL pulse sequence, 631
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VnmrJ Command and Parameter Reference VnmrJ 2.2D

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