ChemDraw User's Manual - CambridgeSoft

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3. Select the search options:If you wanttosearch for astructureThena. To load a structure,right-click and selectRead Structure.b. To edit the structure,double-click it.If you wanttosee theprevious queryThenclick Restore PreviousQuery.4. Click Search.The hit list is displayed in a column namedMatch. Items matching the search criteria arelabeled as TRUE.search for aformulasearch for astructure and aformulasee the R-GroupAnalysisc. Select the SearchType.d. Select the FilterType.a. Type the molecularformula or formulaquery in the And/OrFormula Query box.b. select Clear.a. To edit the structure,double-click it.b. Select the SearchType.c. Select the FilterType.d. Type the molecularformula in theAnd/Or FormulaQuery box.click the Show R-GroupAnalysis box.Similarity SearchesYou can perform similarity searches to find structureswith features corresponding to your searchstructure. For more information about similaritysearching, see the ChemFinder User’s Guide.To search for similarity:1. Select a cell containing the label Structure.2. From the ChemOffice menu, select SimilarityTable or click .The Similarity Query dialog box appears.3. Select the Search Type.4. Select the Similarity Is value.5. Select the Sort order.6. Click Search.ChemDraw 9 ChemDraw/Excel • 213Searching
AdministratorThe hit list is displayed in a column namedMatch. Items matching the search criteria arelabeled as TRUE.Working withStructuresChemDraw/Excel allows you to rename structuresand use the clipboard to cut, copy, and paste structures.Naming StructuresExcel recognizes certain characters as formulas. Toprevent the system from interpreting a chemicalstructure name as an Excel formula, you canrename a structure.To name a structure:1. Select the structure.2. From the ChemOffice menu, select NameMolecule or click .The Name Molecule dialog box appears.The structure is removed from the cell and isplaced on the clipboard.To copy a structure from a cell:1. Select the structure.2. From the ChemOffice menu, select CopyMolecule or click .The structure remains in the cell and a copy isplaced on the clipboard.To paste a structure:1. Select the area into which you want to paste thestructure.2. From the ChemOffice menu, select PasteMolecule or click .The structure is pasted from the clipboard.Viewing StructuresChemDraw/Excel allows you to select whether ornot to display structures in a cell. You can alsoadjust the height and width of cells to display theirentire contents.3. Type the name and click OK.Using the ClipboardYou can cut, copy, and paste structures using theclipboard. After you cut or copy a structure, it isplaced on the clipboard. You can then paste it intoanother cell or another application.To cut a structure from a cell:1. Select the structure.2. From the ChemOffice menu, select CutMolecule or click .Showing and Hiding StructuresTo show structures:1. Select the cells in which you want to displaypictures.2. From the ChemOffice menu, select ShowPicture or click .The structures are displayed in the selectedcells.To hide structures:1. Select the cells in which you do not want todisplay pictures.2. From the ChemOffice menu, select HidePicture or click .The structures are hidden and the cells resize.214•ChemDraw/ExcelCambridgeSoftWorking with Structures
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ChemOffice.Com®ChemDraw®Chemical
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License InformationChemOffice, Chem
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· Licensed users of ChemOffice Ent
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computer, except as provided below.
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Q: IS IT OK TO COPY MY COLLEAGUE’
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A Guide to CambridgeSoft ManualsAnd
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ContentsIntroductionWhat’s New in
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Method 2: Labeling an atom by point
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Chapter 10: Drawing Query Structure
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Searching. . . . . . . . . . . . .
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Administratorthey are presented. Ex
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Administrator12•IntroductionCambr
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The Mac GUI is shown below.Administ
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ToolUse to…AdministratorQueryTool
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AdministratorChemDraw window. Undoc
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AdministratorDouble-clicking on an
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3. Click the checkbox next to Autos
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a file as a different format is use
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QuickDraw is the graphical format t
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Chapter 2: TutorialsOverviewThe tut
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.2. Double-click the atom.The hand
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3. Click the third arrow from the l
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2. Press the Enter or Return key to
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.Add second and third bonds:1. Poin
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Refine the shape of the arrow:1. Po
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4. Click each of the atoms shown be
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4. Select a folder in which to save
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Add labels to C1 and C6:3. Point to
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3. Click Paste to paste the informa
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2. Hold the mouse button and drag u
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Save and close the document:1. From
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The size of the orbital is constrai
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8. Click the Wedged Bond tool, poin
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Chapter 3: Drawing ChemicalStructur
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Adjustthis…If you want to …The
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You can use the tools on the Multip
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To draw a wedged bond:1. Click one
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If you click an atom in a ring, a s
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• Press the Ctrl or Command key w
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To convert ring types:1. With a bon
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Chapter 4:UltraStructNameStructName
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Converting Names toStructuresThere
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category ChemDraw 8 supports... Che
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Chapter 5: Drawing Captions andAtom
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• Subscript—Reduces the text by
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If you label C4, the second and thi
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5. To close the text box, click out
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4. The margin width is applied to a
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Hard-Coded HotKeysYou cannot edit h
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To edit atom number text:1. Click t
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Chapter 6: Drawing Orbitals,Symbols
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To draw a single lobe orbital:1. Ho
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To draw an H-dot or an H-dash:1. Ho
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The Arrow ToolsPaletteUse the Arrow
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Drawing LinesLines drawn with the l
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Some examples of shapes that you ca
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Deleting a SegmentTo delete a curve
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If you wantto...then...If you wantt
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Chapter 7: Manipulating DrawingsOve
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Selecting Entire StructuresTo selec
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The unselected bonds that are attac
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Reflecting ObjectsThrough PlanesYou
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3. The current median bond length f
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3. With the group selected, right-c
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Chapter 8: Advanced DrawingTechniqu
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Am Amyl AmericiumNp para-NeptuniumN
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ProExpanding LabelsMulti-Attached L
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3. Double-click on the cyclopentadi
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If you select only part of a struct
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Customizing the ColorPaletteYou can
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2. Click a color in the Color Wheel
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A new and untitled Template window
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Chapter 9: Working WithStructuresOv
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Propertym/zDescriptionMass/charge,
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3. Click the appropriate Position o
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To create a report and view results
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ProExpand GenericStructuresYou can
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The assigned atoms or bonds are hig
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Chapter 10:StructuresProDrawing Que
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• From the Structure menu, choose
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OptionSimple ringSearch ResultFinds
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Abnormal ValenceThe Abnormal Valenc
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The Bond Type options are described
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In the table below, points are may
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To Position …from the atom or bon
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Page 176 and 177: A structure-based representation of
Page 178 and 179: Because of its prevalence the No Fl
Page 180 and 181: However, you are not interested in
Page 182 and 183: Always Display and PrintAtom Mappin
Page 184 and 185: ExportedQueryPropertiesISIS Mol Rxn
Page 186 and 187: ExportedQueryPropertiesISIS Mol Rxn
Page 188 and 189: Chapter 11: Working With PageLayout
Page 190 and 191: To create headers and footers:1. Fr
Page 192 and 193: Saving Page Setup SettingsYou can s
Page 194 and 195: A check mark appears next to the Sh
Page 196 and 197: Aligning ObjectsUse the Align comma
Page 198 and 199: The table appears in the document w
Page 200 and 201: 7. Press Tab again to create a thir
Page 202 and 203: Chapter 12: Sharing InformationOver
Page 204 and 205: A clipping file or a scrap file is
Page 206 and 207: pasted in other types of documents.
Page 208 and 209: • SMDFormat Import ExportChemDraw
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Page 212 and 213: For single step single or multi-lin
Page 214 and 215: different computers rather than usi
Page 216 and 217: Transferring ChemDrawDocuments Acro
Page 218 and 219: Chapter 13: ChemDraw/ExcelThe ChemD
Page 220 and 221: mats, but you may get error message
Page 222 and 223: Adding Structures withChemDrawThe C
Page 226 and 227: Aligning StructuresA structure may
Page 228 and 229: FunctionActionCHEM.COMPOSITION Retu
Page 230 and 231: AppendicesThis section contains the
Page 232 and 233: Appendix A: Accessing theCambridgeS
Page 234 and 235: Follow the links to do substructure
Page 236 and 237: You can search SciStore.Com for che
Page 238 and 239: Appendix B: Technical SupportOvervi
Page 240 and 241: 4. If the problem still occurs, use
Page 242 and 243: Appendix C: The Chemistry ofChemDra
Page 244 and 245: +*/A series of anyCH 2 COOC(OPh) 3c
Page 246 and 247: Isotopes and ElementsBy default, Ch
Page 248 and 249: CIP rules are designed to order lig
Page 250 and 251: • Critical messages that may affe
Page 252 and 253: MessageThis label has anunrecognize
Page 254 and 255: Appendix D:WorksUltraHow ChemNMROve
Page 256 and 257: Appendix E:WorksProHow ChemPropChem
Page 258 and 259: Appendix F: Shortcuts andHotkeysSho
Page 260 and 261: Enter...to execute Command...Enter.
Page 262 and 263: Enter...to execute Command...Enter.
Page 264 and 265: HotkeyResultHotkeyResultTOTsxX1 n-B
Page 266 and 267: Appendix G: Document SettingsCreati
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Drawing, Atom Label, and Caption Te
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Drawing, Atom Label, and Caption Te
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Appendix H: Chemistry FileFormatsOv
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Double bonds are bit encoded using
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IndexNumerics13C, 1 H shifts, estim
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Bond Propertiesdefining 155descript
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Chemical Warnings (continued)suppre
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Deletingatom labels 87Backspace key
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File format (continued)CTR 198cts 2
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Inserting (continued)rows in tables
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Nicknames (continued)overview 121tr
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Printing (continued)ChemDraw Laser
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Saving customized settings 21Scalec
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System requirements 11TTable tool 1
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Use Defaults (continued)bond proper
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CAMBRIDGESOFTChemOffice Desktop toK
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CS ChemOfficeSoftware SuitesChemOff
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DESKTOPCS E-NotebookElectronic Jour
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DESKTOPCS ChemDrawChemical Structur
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DESKTOPCS Chem3DMolecular Modeling
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DESKTOPCS ChemFinderSearching and I
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DESKTOPCS ChemInfoReference and Che
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ENTERPRISEChemOffice WebServerEnter
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ENTERPRISEOracle CartridgeEnterpris
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KNOWLEDGEE-Notebook EnterpriseDeskt
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KNOWLEDGEDocument ManagerDesktop to
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KNOWLEDGE21CFR11 ComplianceElectron
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RESEARCH&Registration SystemChemica
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RESEARCH&Inventory ManagerChemical
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RESEARCH&CombiChem EnterpriseDeskto
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RESEARCH&BioAssay HTSBiological Ass
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RESEARCH&BioSAR BrowserBiological a
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CHEMICALChemACX DatabaseAvailable C
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CHEMICALThe Merck IndexChemistry’
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CHEMICALChemical DatabasesReference
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CONSULTING &Consulting & ServicesDe
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CS Software Problem ReportFor faste
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