ChemDraw User's Manual - CambridgeSoft

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Bond Propertiesdefining 155descriptors 156reaction center 158removing 156topology 157types 156viewing 156Bond query indicators 156Bond Spacing, description 60Bond tooldescription 15icons 62repeating a label 89Bondsadding 125autoscaling 193changing bond type 69changing type 69double either 157drawing 64drawing by clicking 65editing 69Fixed Length 64layering 71margin width 60multi center attachment 126orientation, changing 70orientation, dative bond 64orientation, wedge bond 64quadruple 63selecting 110types 232Border of page 177Boxesdrawing 100rotating 100Braces 101Bracketusage 164Bracketsdescription 15drawing 101paired 101setting properties 163single 101tool 101using to represent polymers 163Bring to Front command 186Bruker JCAMP file format 201CCalculatingchemical properties 141elemental analysis 139exact mass 139formula 139Molecular Weight 139Calculations see ChemProp 245CambridgeSoft, accessing the website 221–225CambridgeSoft.com 225Can. J. Chem. Document 256Caption text boxesclosing 79creating new line 79CaptionsAnalysis information 139autoscaling 194coloring 84converting to structures 75creating 84creating tables 188editing 85formula 80inserting from structure 73inserting rows in tables 190justification 81setting Font, Size and Styles 83subscript 80superscript 80Table column spacing 189ChemDraw 9 • iii
AdministratorCaptions (continued)text overview 84width 85Carbon-13 shifts, see 13 C, 1 H shifts, estimatingCation, drawing 97CCITT Group 3 and 4 203CD Template 198cds format 199cdxfile format 198saving as 26cdxml format 198Center on Page command 184Centering objects 184Chain Angle, description 59Changingaspect ratio 117Bond orientation 70bond type 69default settings 21perspective 181settings when transferring 194tolerance 110Character Map 20Chargesspecifications 234symbols, drawing 98Check Structureoverview 137when copying 138Checking Chemistry 137Chem3D 141Chem3D objects, caution when sharing files 198ChemBioNews.Com 224ChemClub.com 221ChemDraw2.x file format 198, 1993.5 file format 199cdx format 198closing 30ctp, ctr file formats 198ChemDraw (continued)customizing 20HotKeys File 88Nicknames 121ChemDraw Items folderdescription 27Hotkeys 87isotope table 155nicknames 121Open Special 28overview 27scripts 22style sheets and stationery pads 24templates 133window menu 27ChemDraw Laser Prep 29ChemDraw/Exceladding structure files 211adding structures 210adding structures as SMILES 211adding structures by name 212adding structures with ChemDraw 211aligning structures 215Get ChemDraw List command 209naming molecules 214overview 207searching 212starting 207ChemFinder.com 223Chemical name, structure from 74Chemical propertiescalculating 141ChemProp 141Chemical Properties window 18, 141Chemical Symbolspalette 96rotating 98tool 15, 96Chemical syntax checking 71Chemical Warningsoverview 71iv•CambridgeSoft
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ChemOffice.Com®ChemDraw®Chemical
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License InformationChemOffice, Chem
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· Licensed users of ChemOffice Ent
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computer, except as provided below.
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Q: IS IT OK TO COPY MY COLLEAGUE’
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A Guide to CambridgeSoft ManualsAnd
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ContentsIntroductionWhat’s New in
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Method 2: Labeling an atom by point
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Chapter 10: Drawing Query Structure
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Searching. . . . . . . . . . . . .
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Administratorthey are presented. Ex
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Administrator12•IntroductionCambr
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The Mac GUI is shown below.Administ
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ToolUse to…AdministratorQueryTool
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AdministratorChemDraw window. Undoc
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AdministratorDouble-clicking on an
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3. Click the checkbox next to Autos
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a file as a different format is use
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QuickDraw is the graphical format t
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Chapter 2: TutorialsOverviewThe tut
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.2. Double-click the atom.The hand
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3. Click the third arrow from the l
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2. Press the Enter or Return key to
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.Add second and third bonds:1. Poin
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Refine the shape of the arrow:1. Po
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4. Click each of the atoms shown be
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4. Select a folder in which to save
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Add labels to C1 and C6:3. Point to
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3. Click Paste to paste the informa
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2. Hold the mouse button and drag u
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Save and close the document:1. From
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The size of the orbital is constrai
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8. Click the Wedged Bond tool, poin
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Chapter 3: Drawing ChemicalStructur
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Adjustthis…If you want to …The
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You can use the tools on the Multip
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To draw a wedged bond:1. Click one
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If you click an atom in a ring, a s
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• Press the Ctrl or Command key w
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To convert ring types:1. With a bon
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Chapter 4:UltraStructNameStructName
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Converting Names toStructuresThere
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category ChemDraw 8 supports... Che
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Chapter 5: Drawing Captions andAtom
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• Subscript—Reduces the text by
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If you label C4, the second and thi
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5. To close the text box, click out
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4. The margin width is applied to a
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Hard-Coded HotKeysYou cannot edit h
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To edit atom number text:1. Click t
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Chapter 6: Drawing Orbitals,Symbols
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To draw a single lobe orbital:1. Ho
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To draw an H-dot or an H-dash:1. Ho
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The Arrow ToolsPaletteUse the Arrow
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Drawing LinesLines drawn with the l
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Some examples of shapes that you ca
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Deleting a SegmentTo delete a curve
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If you wantto...then...If you wantt
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Chapter 7: Manipulating DrawingsOve
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Selecting Entire StructuresTo selec
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The unselected bonds that are attac
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Reflecting ObjectsThrough PlanesYou
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3. The current median bond length f
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3. With the group selected, right-c
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Chapter 8: Advanced DrawingTechniqu
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Am Amyl AmericiumNp para-NeptuniumN
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ProExpanding LabelsMulti-Attached L
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3. Double-click on the cyclopentadi
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If you select only part of a struct
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Customizing the ColorPaletteYou can
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2. Click a color in the Color Wheel
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A new and untitled Template window
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Chapter 9: Working WithStructuresOv
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Propertym/zDescriptionMass/charge,
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3. Click the appropriate Position o
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To create a report and view results
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ProExpand GenericStructuresYou can
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The assigned atoms or bonds are hig
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Chapter 10:StructuresProDrawing Que
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• From the Structure menu, choose
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OptionSimple ringSearch ResultFinds
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Abnormal ValenceThe Abnormal Valenc
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The Bond Type options are described
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In the table below, points are may
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To Position …from the atom or bon
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. Not necessarily carbon (a generic
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A structure-based representation of
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Because of its prevalence the No Fl
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However, you are not interested in
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Always Display and PrintAtom Mappin
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ExportedQueryPropertiesISIS Mol Rxn
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ExportedQueryPropertiesISIS Mol Rxn
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Chapter 11: Working With PageLayout
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To create headers and footers:1. Fr
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Saving Page Setup SettingsYou can s
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A check mark appears next to the Sh
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Aligning ObjectsUse the Align comma
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The table appears in the document w
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7. Press Tab again to create a thir
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Chapter 12: Sharing InformationOver
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A clipping file or a scrap file is
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pasted in other types of documents.
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• SMDFormat Import ExportChemDraw
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.opened in versions 3.0, 3.0.1, 3.0
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For single step single or multi-lin
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different computers rather than usi
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Transferring ChemDrawDocuments Acro
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Chapter 13: ChemDraw/ExcelThe ChemD
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mats, but you may get error message
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Adding Structures withChemDrawThe C
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3. Select the search options:If you
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Aligning StructuresA structure may
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FunctionActionCHEM.COMPOSITION Retu
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AppendicesThis section contains the
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Appendix A: Accessing theCambridgeS
Page 234 and 235: Follow the links to do substructure
Page 236 and 237: You can search SciStore.Com for che
Page 238 and 239: Appendix B: Technical SupportOvervi
Page 240 and 241: 4. If the problem still occurs, use
Page 242 and 243: Appendix C: The Chemistry ofChemDra
Page 244 and 245: +*/A series of anyCH 2 COOC(OPh) 3c
Page 246 and 247: Isotopes and ElementsBy default, Ch
Page 248 and 249: CIP rules are designed to order lig
Page 250 and 251: • Critical messages that may affe
Page 252 and 253: MessageThis label has anunrecognize
Page 254 and 255: Appendix D:WorksUltraHow ChemNMROve
Page 256 and 257: Appendix E:WorksProHow ChemPropChem
Page 258 and 259: Appendix F: Shortcuts andHotkeysSho
Page 260 and 261: Enter...to execute Command...Enter.
Page 262 and 263: Enter...to execute Command...Enter.
Page 264 and 265: HotkeyResultHotkeyResultTOTsxX1 n-B
Page 266 and 267: Appendix G: Document SettingsCreati
Page 268 and 269: Drawing, Atom Label, and Caption Te
Page 278 and 279: Appendix H: Chemistry FileFormatsOv
Page 280 and 281: Double bonds are bit encoded using
Page 282 and 283: IndexNumerics13C, 1 H shifts, estim
Page 286 and 287: Chemical Warnings (continued)suppre
Page 288 and 289: Deletingatom labels 87Backspace key
Page 290 and 291: File format (continued)CTR 198cts 2
Page 292 and 293: Inserting (continued)rows in tables
Page 294 and 295: Nicknames (continued)overview 121tr
Page 296 and 297: Printing (continued)ChemDraw Laser
Page 298 and 299: Saving customized settings 21Scalec
Page 300 and 301: System requirements 11TTable tool 1
Page 302 and 303: Use Defaults (continued)bond proper
Page 304 and 305: CAMBRIDGESOFTChemOffice Desktop toK
Page 306 and 307: CS ChemOfficeSoftware SuitesChemOff
Page 308 and 309: DESKTOPCS E-NotebookElectronic Jour
Page 310 and 311: DESKTOPCS ChemDrawChemical Structur
Page 312 and 313: DESKTOPCS Chem3DMolecular Modeling
Page 314 and 315: DESKTOPCS ChemFinderSearching and I
Page 316 and 317: DESKTOPCS ChemInfoReference and Che
Page 318 and 319: ENTERPRISEChemOffice WebServerEnter
Page 320 and 321: ENTERPRISEOracle CartridgeEnterpris
Page 322 and 323: KNOWLEDGEE-Notebook EnterpriseDeskt
Page 324 and 325: KNOWLEDGEDocument ManagerDesktop to
Page 326 and 327: KNOWLEDGE21CFR11 ComplianceElectron
Page 328 and 329: RESEARCH&Registration SystemChemica
Page 330 and 331: RESEARCH&Inventory ManagerChemical
Page 332 and 333: RESEARCH&CombiChem EnterpriseDeskto
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RESEARCH&BioAssay HTSBiological Ass
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RESEARCH&BioSAR BrowserBiological a
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CHEMICALChemACX DatabaseAvailable C
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CHEMICALThe Merck IndexChemistry’
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CHEMICALChemical DatabasesReference
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CONSULTING &Consulting & ServicesDe
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CS Software Problem ReportFor faste
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ChemDraw User's Manual - CambridgeSoft

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