ChemDraw User's Manual - CambridgeSoft

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The table below describes the functions of the toolsfor all versions. Some of the tools have multipleoptions that can be selected from a tool palette.ToolSelectionStructurePerspectiveUse to…Lasso. Select objects by draggingaround them.Marquee. Select objects by draggingdiagonally across them.Selected objects can be furthermanipulated using menu commands.Rotate a selected object in threedimensions.ToolArrowstoolbarOrbitalstoolbarDrawingElementstoolbarUse to…Draw arrows. Arrows of differenttypes can be selected from the Arrowstoolbar.Draw orbitals. Orbitals of differenttypes can be selected from theOrbitals toolbar.Draw annotations that lack chemicalsignificance, such as boxes and lines.Drawing Elements of different typescan be selected from the DrawingElements toolbar.FragmentationtoolbarFragmentation tool. Splits moleculesacross specific bonds.Dissociation tool. Breaks bonds anddraws a reaction.Retrosynthesis tool. Breaks bondsand draws a reaction.BracketstoolbarIncludes the Arc tools.ProDraw brackets, parentheses, andbraces. Brackets of different types canbe selected from the Brackets toolpalette.BondEraserMultipleBondtoolbarDraw bonds and set bond properties.Delete objects. Click on an object todelete; drag to delete multiple objects.Draw multiple bonds and set bondproperties. Bonds of different typescan be selected from the MultipleBonds tool palette.ChemicalSymbolstoolbarArcstoolbarDraw chemically significant symbolssuch as charges, radicals, and lonepairs. Symbols of different types canbe selected from the Symbols toolpalette.Draw arcs. Arcs of different degreescan be selected from the Arcs toolpalette.TextCreate atom labels and captions.NOTE: The Arcs tool is a separate tool onlyon ChemDraw Standard.PenDraw freehand shapes such as customarrows and orbitals.AcyclicChainDraw chains of any length.ChemDraw 9 ChemDraw Basics • 15The Main Tools Palette
ToolUse to…AdministratorQueryToolstoolbarTemplatestoolbarsDraw stereochemical flags, indicatefree sites, alternative groups andcorrespondences between atoms inquery structures. Various options canbe selected from the Query toolpalette.Draw structures with templatesstored in template documents.Templates can be selected from theTemplates toolbars.LassoStructure PerspectiveSolid BondMultiple BondsDashed BondHashed BondHashed Wedged BondBold BondMarqueeFragmentation toolsEraserTextPenArrowsOrbitalsDrawing ElementsRingsDraw common structural components.Bold Wedged BondHollow Wedged BondBracketsChemical SymbolsTableDraw tables with multiple rows andcolumns.Wavy bondTableQuery toolsTLC plateTLC PlateProDraw TLC plates with multiple lanesand adjustable solvent front andspots.Acyclic ChainCyclopropane RingCyclopentane RingTemplatesCyclobutane RingCyclohexane RingCycloheptane RingCyclooctane RingCyclohexane chair 1Cyclohexane chair 2Cyclopentadiene RingBenzene RingSetting the Default ToolUse the Preferences dialog box to set which tool isautomatically selected when you open documents.To set the default tool:1. From the File menu, choose Preferences.The Preferences dialog box appears.2. Click the Open/Save tab.16•ChemDraw BasicsCambridgeSoftThe Main Tools Palette
Page 1 and 2: ChemOffice.Com®ChemDraw®Chemical
Page 3 and 4: License InformationChemOffice, Chem
Page 5 and 6: · Licensed users of ChemOffice Ent
Page 7 and 8: computer, except as provided below.
Page 9 and 10: Q: IS IT OK TO COPY MY COLLEAGUE’
Page 11 and 12: A Guide to CambridgeSoft ManualsAnd
Page 13 and 14: ContentsIntroductionWhat’s New in
Page 15 and 16: Method 2: Labeling an atom by point
Page 17 and 18: Chapter 10: Drawing Query Structure
Page 19 and 20: Searching. . . . . . . . . . . . .
Page 21 and 22: Administratorthey are presented. Ex
Page 23 and 24: Administrator12•IntroductionCambr
Page 25: The Mac GUI is shown below.Administ
Page 29 and 30: AdministratorChemDraw window. Undoc
Page 31: AdministratorDouble-clicking on an
Page 36 and 37: 3. Click the checkbox next to Autos
Page 38 and 39: a file as a different format is use
Page 40 and 41: QuickDraw is the graphical format t
Page 42 and 43: Chapter 2: TutorialsOverviewThe tut
Page 44 and 45: .2. Double-click the atom.The hand
Page 46 and 47: 3. Click the third arrow from the l
Page 48 and 49: 2. Press the Enter or Return key to
Page 50 and 51: .Add second and third bonds:1. Poin
Page 52 and 53: Refine the shape of the arrow:1. Po
Page 54 and 55: 4. Click each of the atoms shown be
Page 56 and 57: 4. Select a folder in which to save
Page 58 and 59: Add labels to C1 and C6:3. Point to
Page 60 and 61: 3. Click Paste to paste the informa
Page 62 and 63: 2. Hold the mouse button and drag u
Page 64 and 65: Save and close the document:1. From
Page 66 and 67: The size of the orbital is constrai
Page 68 and 69: 8. Click the Wedged Bond tool, poin
Page 70 and 71: Chapter 3: Drawing ChemicalStructur
Page 72 and 73: Adjustthis…If you want to …The
Page 74 and 75: You can use the tools on the Multip
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To draw a wedged bond:1. Click one
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If you click an atom in a ring, a s
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• Press the Ctrl or Command key w
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To convert ring types:1. With a bon
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Chapter 4:UltraStructNameStructName
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Converting Names toStructuresThere
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category ChemDraw 8 supports... Che
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Chapter 5: Drawing Captions andAtom
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• Subscript—Reduces the text by
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If you label C4, the second and thi
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5. To close the text box, click out
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4. The margin width is applied to a
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Hard-Coded HotKeysYou cannot edit h
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To edit atom number text:1. Click t
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Chapter 6: Drawing Orbitals,Symbols
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To draw a single lobe orbital:1. Ho
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To draw an H-dot or an H-dash:1. Ho
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The Arrow ToolsPaletteUse the Arrow
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Drawing LinesLines drawn with the l
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Some examples of shapes that you ca
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Deleting a SegmentTo delete a curve
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If you wantto...then...If you wantt
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Chapter 7: Manipulating DrawingsOve
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Selecting Entire StructuresTo selec
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The unselected bonds that are attac
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Reflecting ObjectsThrough PlanesYou
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3. The current median bond length f
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3. With the group selected, right-c
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Chapter 8: Advanced DrawingTechniqu
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Am Amyl AmericiumNp para-NeptuniumN
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ProExpanding LabelsMulti-Attached L
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3. Double-click on the cyclopentadi
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If you select only part of a struct
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Customizing the ColorPaletteYou can
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2. Click a color in the Color Wheel
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A new and untitled Template window
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Chapter 9: Working WithStructuresOv
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Propertym/zDescriptionMass/charge,
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3. Click the appropriate Position o
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To create a report and view results
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ProExpand GenericStructuresYou can
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The assigned atoms or bonds are hig
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Chapter 10:StructuresProDrawing Que
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• From the Structure menu, choose
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OptionSimple ringSearch ResultFinds
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Abnormal ValenceThe Abnormal Valenc
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The Bond Type options are described
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In the table below, points are may
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To Position …from the atom or bon
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. Not necessarily carbon (a generic
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A structure-based representation of
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Because of its prevalence the No Fl
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However, you are not interested in
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Always Display and PrintAtom Mappin
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ExportedQueryPropertiesISIS Mol Rxn
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ExportedQueryPropertiesISIS Mol Rxn
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Chapter 11: Working With PageLayout
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To create headers and footers:1. Fr
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Saving Page Setup SettingsYou can s
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A check mark appears next to the Sh
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Aligning ObjectsUse the Align comma
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The table appears in the document w
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7. Press Tab again to create a thir
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Chapter 12: Sharing InformationOver
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A clipping file or a scrap file is
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pasted in other types of documents.
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• SMDFormat Import ExportChemDraw
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.opened in versions 3.0, 3.0.1, 3.0
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For single step single or multi-lin
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different computers rather than usi
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Transferring ChemDrawDocuments Acro
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Chapter 13: ChemDraw/ExcelThe ChemD
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mats, but you may get error message
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Adding Structures withChemDrawThe C
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3. Select the search options:If you
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Aligning StructuresA structure may
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FunctionActionCHEM.COMPOSITION Retu
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AppendicesThis section contains the
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Appendix A: Accessing theCambridgeS
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Follow the links to do substructure
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You can search SciStore.Com for che
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Appendix B: Technical SupportOvervi
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4. If the problem still occurs, use
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Appendix C: The Chemistry ofChemDra
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+*/A series of anyCH 2 COOC(OPh) 3c
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Isotopes and ElementsBy default, Ch
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CIP rules are designed to order lig
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• Critical messages that may affe
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MessageThis label has anunrecognize
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Appendix D:WorksUltraHow ChemNMROve
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Appendix E:WorksProHow ChemPropChem
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Appendix F: Shortcuts andHotkeysSho
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Enter...to execute Command...Enter.
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Enter...to execute Command...Enter.
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HotkeyResultHotkeyResultTOTsxX1 n-B
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Appendix G: Document SettingsCreati
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Drawing, Atom Label, and Caption Te
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Appendix H: Chemistry FileFormatsOv
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Double bonds are bit encoded using
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IndexNumerics13C, 1 H shifts, estim
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Bond Propertiesdefining 155descript
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Chemical Warnings (continued)suppre
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Deletingatom labels 87Backspace key
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File format (continued)CTR 198cts 2
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Inserting (continued)rows in tables
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Nicknames (continued)overview 121tr
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Printing (continued)ChemDraw Laser
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Saving customized settings 21Scalec
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System requirements 11TTable tool 1
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Use Defaults (continued)bond proper
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CAMBRIDGESOFTChemOffice Desktop toK
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CS ChemOfficeSoftware SuitesChemOff
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DESKTOPCS E-NotebookElectronic Jour
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DESKTOPCS ChemDrawChemical Structur
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DESKTOPCS Chem3DMolecular Modeling
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DESKTOPCS ChemFinderSearching and I
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DESKTOPCS ChemInfoReference and Che
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ENTERPRISEChemOffice WebServerEnter
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ENTERPRISEOracle CartridgeEnterpris
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KNOWLEDGEE-Notebook EnterpriseDeskt
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KNOWLEDGEDocument ManagerDesktop to
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KNOWLEDGE21CFR11 ComplianceElectron
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RESEARCH&Registration SystemChemica
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RESEARCH&Inventory ManagerChemical
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RESEARCH&CombiChem EnterpriseDeskto
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RESEARCH&BioAssay HTSBiological Ass
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RESEARCH&BioSAR BrowserBiological a
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CHEMICALChemACX DatabaseAvailable C
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CHEMICALThe Merck IndexChemistry’
Page 342 and 343:
CHEMICALChemical DatabasesReference
Page 344 and 345:
CONSULTING &Consulting & ServicesDe
Page 347:
CS Software Problem ReportFor faste
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ChemDraw User's Manual - CambridgeSoft

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