Analysis of genome-scale count data in Bioconductor
Analysis of genome-scale count data in Bioconductor
Analysis of genome-scale count data in Bioconductor
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Outl<strong>in</strong>e1. Applications2. Summarization3. Statistical models for <strong>count</strong> <strong>data</strong>4. “Normalization”5. Shar<strong>in</strong>g <strong>in</strong>formation over entire <strong>data</strong>set6. Statistical test<strong>in</strong>g7. Other considerations – error model and morecomplex designs(Current) <strong>Bioconductor</strong> tools:baySeq, DEGseq, DESeq, edgeRPrelim<strong>in</strong>aries(~40m<strong>in</strong>)Practical(~20m<strong>in</strong>)Moreadvancedtopics(~30m<strong>in</strong>)Practical(~30m<strong>in</strong>)