Analysis of genome-scale count data in Bioconductor
Analysis of genome-scale count data in Bioconductor
Analysis of genome-scale count data in Bioconductor
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Applications• Differential gene expression: RNA-seq,“Tag”-seq, etc.• Differential enrichment: histonemodifications, other types <strong>of</strong> “enrichment”-based sequenc<strong>in</strong>g e.g. ChIP-seq, MeDIPseq,etc.• Analyses <strong>of</strong> changes <strong>in</strong> other tables <strong>of</strong><strong>count</strong>s: e.g. peptide <strong>count</strong>s from MS/MSexperiments, metagenomics experiments.