Poster Abstracts246 Purification <strong>of</strong> Bacterial APOA-1and Characterization <strong>of</strong> Novel Anti-Cancer Drug Delivery SystemT. Young 1 , A. Lacko 21North Carolina State University, Raleigh, NC,United States; 2 University <strong>of</strong> North Texas HealthScience Cente, Fort Worth, TX, United StatesAlthough chemotherapy regimens have proved effective in attackingcancer cells and tumors, side effects and drug resistance remain amajor concern during cancer therapy. The use <strong>of</strong> reconstituted highdensity lipoprotein (rHDL) nanoparticles has been investigated as adrug delivery system, including the transporting <strong>of</strong> small interferingribonucleic acid (siRNA). The use <strong>of</strong> rHDL nanoparticles has greatpotential, in this regard, due to their ability to specifically targetcancer cells via the HDL (SR-B1) receptor. The goal <strong>of</strong> these studieswas to improve the purification <strong>of</strong> Apolipoproteins A-1 (ApoA-1), amajor component <strong>of</strong> rHDL, and the preliminary characterization <strong>of</strong>the siRNA carrying rHDL nanoparticles. E.coli cells transfected withthe apo A-I gene was grown at 37OC, until an optical density <strong>of</strong> 0.6was reached. The cells were then induced with 0.5mM Isopropyl β-D-1-thiogalactopyranoside (IPTG) and centrifuged. Subsequently, thepellets were suspended in the lysate solution and loaded onto a Nickel-Sepharose column. Thereafter, rHDL nanoparticles using siRNA wereprepared. 160 mg per liter <strong>of</strong> purified ApoA1 was obtained. Particlemeasurements and the chemical composition <strong>of</strong> the particles are beinginvestigated. Further investigation regarding the efficiency <strong>of</strong> theincorporation <strong>of</strong> siRNA, the physical and chemical properties as wellas cytotoxicity <strong>of</strong> the particles will contribute to the assessment <strong>of</strong> theefficiency <strong>of</strong> these particles as a novel anti-cancer drug delivery system.247 Screening for Optimal PurificationConditions for Histidine-TaggedWater-Soluble and MembraneProteins Using Magnetic BeadsMethodsH. Hedlund, E. Mascher, G. RisbergGE Healthcare Life Sciences, Uppsala, SwedenThe development <strong>of</strong> methods for efficient expression screening <strong>of</strong>multiple numbers <strong>of</strong> recombinant proteins or optimization <strong>of</strong> thepurification conditions <strong>of</strong> proteins is essential to shorten the time fromgene to drug targets. The combination <strong>of</strong> para- magnetic beads andaffinity purification using IMAC resins (pre-charged with Ni2+-ions)for capture <strong>of</strong> histidine tagged proteins is an easy-to-use format anda powerful tool allowing for rapid, small-scale purification. We willdescribe two studies for optimization <strong>of</strong> purification conditions <strong>of</strong>histidine-tagged proteins. All experiments were done using Ni2+chargedHis Mag Sepharose Ni. In the first study optimal purificationconditions for a water-soluble histidine-tagged protein was investigatedat eight different buffer conditions and four different sample loads(varying from 25 % to 100 % <strong>of</strong> the total binding capacity). The studywas performed using a liquid handling workstation.A good balancebetween yield and purity was obtained at 40 mM imidazole and at asample load between 50 % and 100 % <strong>of</strong> the total binding capacity. Inthe second study screening for optimal solubilization and purificationconditions for an integral membrane protein was performed, usingseven detergents. The screening protocol involved a rapid purificationstep before analyses, evaluation and final choice <strong>of</strong> detergent(s).Obtained results from this screening gave reliable results that could alsobe fed into further scale-up experiments. We will present results fromWestern blotting, gel filtration and SDS-PAGE. The para-magnetic beadformat simplified and shortened the handling procedures through-outboth screening workflows.248 Production <strong>of</strong> Recombinant MouseFlower Protein in E. coli: Application<strong>of</strong> Mistic Fusion to Improving theExpression <strong>of</strong> Membrane ProteinsJ.L. Martinez-Torrecuadrada 1 , M. Marenchino 2 ,R. González 1 , J. López-Alonso 2 ,R. Campos-Olivas 2 , G. Roncador 3 , E. Moreno 41Proteomics Core Unit, Spanish National CancerCentre (CNIO), Madrid, Spain; 2 Spectroscopyand Nuclear Magnetic Resonance Unit. SpanishNational Cancer Centre (CNIO), Madrid, Spain;3Monoclonal Antibodies Core Unit, SpanishNational Cancer Centre (CNIO), Madrid, Spain;4Cell Competition Group, Spanish National CancerCentre (CNIO), Madrid, SpainThe structural and functional studies <strong>of</strong> membrane proteins havebeen greatly hindered due to difficulties in their over-expression andproduction. It is also <strong>of</strong>ten difficult to generate effective antibodies tomembrane proteins. In our laboratory, we have addressed the problem<strong>of</strong> producing high level amounts <strong>of</strong> membrane proteins in Escherichiacoli by use <strong>of</strong> Mistic, a Bacillus subtilis protein, as a fusion partner. Flower(Fwe) is a membrane protein that is conserved in animals and proposedto be a Ca2+ channel in neurons. It has been recently reported thatin Drosophila Flower is a component <strong>of</strong> the cell competition responsethat is required and sufficient to label cells as “winners” or “losers”,promoting the elimination <strong>of</strong> weaker cells from a growing populationin order to optimize tissue fitness. This process may have biomedicalimplications because imbalances in cell fitness appear during aging,cancer formation and metastasis. In this work, we employed themembrane protein Mistic to assist in the production <strong>of</strong> this protein.The construct 6xHis-Mistic – Flower carrying a TEV cleavage site wasefficiently overexpressed in E. coli. The IMAC-based purification andcleavage <strong>of</strong> the recombinant protein was achieved in the presence <strong>of</strong>the detergent lauryldimethylamino oxide (LDAO). Circular dichroismshowed a high content in helical structure as predicted from the aminoacid sequence by the program TMHMM. Also, the recombinant Mistic–Flower was used as antigen source to produce monoclonal antibodies inKO mice. The generated monoclonal antibodies were able to recognizeFlower protein by Western blot and immunohistochemistry, indicatingthat this recombinant protein retained the antigenicity <strong>of</strong> the nativeform. These antibodies will facilitate importantly further functionalstudies on Flower protein.102 • <strong>ABRF</strong> <strong>2011</strong> — Technologies to Enable Personalized Medicine
249 Rapid Monoclonal Antibody GlycanPr<strong>of</strong>iling Using an IntegratedMicr<strong>of</strong>luidic-Based mAb-Glyco Chipand Quadrupole Tim-<strong>of</strong>-Flight MassSpectrometryC. Miller, N. Tang, K. WaddellAgilent Technologies, Palo Alto, CA, United StatesProtein biologics now represent a significant share <strong>of</strong> pharmaceuticalsales and future growth potential, particularly in an era <strong>of</strong> increasingpatent expirations. A range <strong>of</strong> analytical methods is required todetermine the purity, identity and integrity <strong>of</strong> protein biologics atmultiple points along the manufacturing process, from cell culture todownstream purification, product characterization and lot release.Characterization <strong>of</strong> glycans from antibodies is fundamentally importantin biotherapeutics design and disease progression and detection. Theability to characterize glycans rapidly has been limited by the samplepreparation steps and structural complexity <strong>of</strong> the glycoproteins.To address this problem, we have developed a micr<strong>of</strong>luidic chipthat performs rapid on-line cleavage <strong>of</strong> glycans from monoclonalantibodies, captures the released glycans and then separates themprior to nanospray ionization in the mass spectrometer. The entire runtime is 12 minutes. A glycan accurate mass database was establishedallowing quick assignment and identification <strong>of</strong> the glycans.250 Protein Cleavage, Disulfide BondsReduction, Metabolite Synthesis andMuch More Using Electrochemistry/MSJ. Powers 1 , J. Purkerson 1 , A. Kraj 2 , M. Eysberg 2 ,J.P. Chervet 21Antec, Palm Bay, FL, United States; 2 Antec,Zoeterwoude, The NetherlandsRecently, the scope <strong>of</strong> Electrochemistry (EC) upfront MS has beenextended from mimicking drug metabolism towards new applicationssuch as: protein/peptide cleavage, disulfide bonds reduction, covalentdrug-protein binding, etc. In this presentation we will show theapplication <strong>of</strong> on-line EC/MS as a powerful tool to simulate variousoxidation and reduction processes in life sciences. A specially designedµ-preparative electrochemical flow cell will be presented. The cellallows the synthesis <strong>of</strong> sufficient amounts <strong>of</strong> metabolites in a few minutesfor subsequent use as reference material (e.g. NMR or MS). Newscanning method was applied for oxidation <strong>of</strong> the highly concentratedsamples (mM range) to achieve high yield in the metabolites formation.Stable oxidation conditions were obtained without the need <strong>of</strong> anycell maintenance for a prolonged period <strong>of</strong> time. Electrochemistryup front MS can be applied for protein and peptide cleavage (as apromising new approach to enzymatic digestion). Electrochemicalcleavage <strong>of</strong> proteins and peptides occurs very specifically at C-terminal<strong>of</strong> the Tyrosine and Tryptophan peptide bonds. Examples <strong>of</strong> oxidativecleavage will be presented. Disulfide bonds are one <strong>of</strong> the mostimportant post-translational modifications for proteins. In this posterwe present the structural analysis <strong>of</strong> biologically active peptidesand proteins containing disulfide bonds (e.g., somatostatin, insulin,etc) using electrochemistry (EC) combined with mass spectrometry.Therefore the sample undergoes electrolytic disulfide cleavage in theelectrochemical flow cell followed by online MS analysis. Based on theintact protein mass and the resulting fragments and the MS/MS dataunambiguous assignment <strong>of</strong> the disulfide bonds becomes possible.All these applications illustrate the tremendous power and broadapplicability <strong>of</strong> electrochemistry as a tool to mimic nature’s Redoxreactions within a few seconds or minutes.251 Protein Sequencing Research Group(PSRG): Results <strong>of</strong> the PSRG <strong>2011</strong>Study: Sensitivity Assessment <strong>of</strong>Edman and Mass SpectrometricTerminal Sequencing <strong>of</strong> an UnknownProteinH. Remmer 1 , J.S. Smith 2 , W. Sandoval 3 , B. Xiang 4 ,K. Mawuenyega 5 , D. Suckau 6 , V. Katta 3 ,J.J. Walters 7 , P. Hunziker 81University <strong>of</strong> Michigan, Ann Arbor, MI, UnitedStates; 2 University <strong>of</strong> Texas Medical Branch,Galveston, TX, United States, 3 Genentech,Inc., South San Francisco, CA, United States,4Monsanto Company, St. Louis, MO, United States,5Washington University School <strong>of</strong> Medicine,St. Louis, MO, United States, 6 Bruker Daltonics,Bremen, Germany, 7 Sigma-Aldrich, St. Louis,MO, United States, 8 University <strong>of</strong> Zurich, Zurich,SwitzerlandEstablishing the N-terminal sequence <strong>of</strong> intact proteins plays a criticalrole in biochemistry and potential drug development. N-terminalsequence analysis is necessary for quality control <strong>of</strong> protein biologics,for determining sites <strong>of</strong> signal peptide cleavage events, as a first stepin elucidating the sequences <strong>of</strong> genes from uncommon species andfor the characterization <strong>of</strong> monoclonal antibodies. Automated Edmandegradation has been the method <strong>of</strong> choice for these analyses. However,alternate methods for N-terminal sequence analysis have emerged. Therecent PSRG studies have established that Edman sequencing and massspectrometry based techniques have varied strengths and weaknessesdepending on several experimental factors and both play an importantrole in terminal sequencing. With this complimentary role realized,the <strong>2011</strong> PSRG study attempts to evaluate the sensitivity limits <strong>of</strong> thevarious sequencing techniques. The PSRG distributed three samplesets <strong>of</strong> 3 tubes each, varying by sample format (lyophilized, gel sliceor membrane piece). Each set <strong>of</strong> three samples contains the samerecombinant protein with increasing amounts <strong>of</strong> material. The sequence<strong>of</strong> this protein is not listed in any database. Participants could requestany one, two, or all three sample sets. Including PSRG committee, a total<strong>of</strong> 38 participants requested 74 sample sets. The participants wereasked to determine as many amino acids from both termini by theirmethod <strong>of</strong> choice, and were encouraged to try multiple methods forsequence elucidation. Study participants were directed to a websiteto anonymously upload sequences and supporting data. Our analysisfocuses on the length and accuracy <strong>of</strong> the sequence calls reported bythe participants, and how that compares with decreasing amounts <strong>of</strong>protein and the type <strong>of</strong> sample format analyzed. A comparison <strong>of</strong> theresults obtained by Edman chemistry and by alternative technologiesas well as information on the type <strong>of</strong> instruments and protocols isreported.Poster Abstracts<strong>ABRF</strong> <strong>2011</strong> — Technologies to Enable Personalized Medicine • 103
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