Annual Report 2008.pdf - SAMSI

• Rougier J.C., (2008). “Efficient Emulators for Multivariate Deterministic Functions”
being revised for the Journal of Computational and Graphical Statistics.
• Rougier, J., Guillas, S., Maute, A., Richmond, A. “Emulating the Thermosphere-
Ionosphere Electrodynamics General Circulation Model (TIE-GCM)” Being revised for
Technometrics. SAMSI TR 2007-5 (2007)
• Santner, T.J., P. F. Craigmile, C. A. Calder, and R. Paul “Effect and Pathways Modifiers
in a Bayesian Pathways Analysis of the National Human Exposure Assessment Survey for
Arsenic in EPA Region 5" to appear in Environmental Science & Technology.
• Singh, A. V., Rouchka, E., Rempala, G., Bastian, C., Knudsen, T. B. (2007) “Integrative
Database Management for Mouse Development: Systems and Concepts” Birth defects
research (Part C), 81, 1-19.
• Spiller E.T., A. Budhiraja, K. Ide, and C.K.R.T. Jones. “Modified Particle Filter
Methods for Assimilating Lagrangian Data into a Point-vortex Model” (to appear in
Physica D).
• Taddy, M., Herbert K. H. Lee, Genetha A. Gray, and Joshua D. Griffin, “Bayesian
Guided Pattern Search for Robust Local Optimization" submitted for publication,
available as tech report UCSC ams2008-02 at
http://www.ams.ucsc.edu/reports/trview.php?content=view&name=ams2008-02
• White, G., Reichert, P., Bayarri, M.J., Santner, T.J. and Pittman, E.B., “Bayesian Kalman
Filter for Emulation of Complex Engineering Computer Models”, submitted to
Technometrics.
• Williams, B.J., Santner, T.J., Notz, W.I., Lehman, J.S. “Sequential Design of Computer
Experiments for Constrained Optimization” Submitted. (2006)
• Yamada, Y. R. (2007) “Quantitative Models of Transcriptional Elongation” PhD thesis,
Cornell.
• Yamada, Y. R. (2008) “A Look-Ahead Model for the Elongation Dynamics of
Transcription”, submitted to the Biophysical journal.
Reports in Preparation
• Agarwal, P., Sukhendu Chakraborty, Jim Clark, Sean McMahon, and Hai Yu . “Scalable
Algorithms for Computing Understory Light and Dispersal in a Forest Growth Model”
• Bayarri, M.J., J. Berger, F. Liu and R. Paulo. “Modeling Issues in Implementing
Bayesian Analyses of Complex Computer Models: Modularization, Confounding and
Marginalization"