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144 3 Vibrutionnl Spcctrtr as N Prohc OJ Structurnl Order<br />

Table 3-2. Characteristic calculated and expeiimental ‘in band’ frequencies fot the conformers<br />

-CH~’CHL’~’CH~-CHI and -CHP(~)CH~(~’CH~-CH~ at the end of the n-nonadecdnr molecule<br />

v (cm-’)<br />

Calculated<br />

Observed<br />

TG 1348 1342 (IR)<br />

879 866 (R), 866 (IR)<br />

769 766 (IR)<br />

GT 1367<br />

851 844 (R), 845 (IR)<br />

3.14 Case Studies<br />

3.14.1 Conformational Mapping of Fatty Acids Through Mass<br />

Defects<br />

It becomes apparent that the use of selective deuteration becomes a powerful tool<br />

for the mapping, site by site, of the coiifoiniation of polymethylene chains. This has<br />

been applied for the conformational mapping of n-alkane and of fatty acids. The<br />

idea was first proposed by Snyder and Poor for n-alkanes [lo21 and was later<br />

applied to the case of fatty acids [lo71 and has settled the issue on the conformation<br />

in the solid state which has long been matter of great debate [108].<br />

Fatty acids are typical of a class of compounds for which the existence of premelting<br />

phenomena has been claimed with the formation of ‘liquid-like’ structures<br />

for the molecules while still in the solid. The structure of these systems has been<br />

studied by many workers. The molecules in the solid are dimeric since pairs of carboxyl<br />

groups face each other and are held together by hydrogen bonds. Moreover,<br />

complex polymorphic phenomena have been revealed depending on the way crystallization<br />

is carried out (from the melt, from solution, froin the kind of solvent,<br />

etc.) [107, 1091. More recent works based on the study of LAM inodes in the<br />

Raman suggested that the molecules of fatty acids, independent of the crystalline<br />

form, are never all-trans planar and contain somewhere along the chain a gauche<br />

distortion [108]. These information were at odds with our studies on LAM modes of<br />

the same materials which were shown to be fully trans-planar [110, 11 I].<br />

The use of defect gap modes using selectively deuterated materials have definitely<br />

solved the problem. We have recorded the infrared spectra of solid perhydrogenated<br />

stearic and palmitic acids and of a few selectively deuterated derivatives.<br />

For palmitic acid, single CD2 group were placed in position 2, 3, or 4 (carbon atom<br />

1 is that of the carboxyl group); for stearic acid, the single CD? group was placed in<br />

position 2, 3, 4, 5, 6, 7, or 13. As an example of the way we proceeded, Figure 3-25<br />

illustrates the infrared spectra of: (i) normal undeuterated palmitic acid (Figure

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