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Agaricostilbales Agaricostilbomycetes Wallemiales, Wallemiomycetes Entorrhizales, Entorrhizomycetes Classiculales, Classiculomycetes Cryptomycocolacales, Cryptomycocolacomycetes Mixiales, Mixiomycetes Atractiellales, Atractiellomycetes Spiculogloeales Cystobasidiales Erythrobasidiales Cystobasidiomycetes Naohideales Pucciniomycotina Helicobasidiales Platygloeales Septobasidiales Pucciniomycetes Pucciniales Pachnocybales Heterogastridiales Leucosporidiales Microbotryomycetes Microbotryales Sporidiobolales Urocystales Ustilaginales Ustilaginomycetes Malasseziales Doassansiales Entylomatales Exobasidiales Exobasidiomycetes Georgefischeriales Microstromatales Tilletiales Cystofilobasidiales Filobasidiales Tremellales Dacrymycetales, Dacrymycetes Auriculariales Sebacinales Agaricomycetes Cantharellales Trechisporales Geastrales Gomphales Phallomycetidae Hysterangiales Phallales Hymenochaetales Corticiales Gloeophyllales Polyporales Thelephorales Russulales Agaricales Atheliales Boletales Tremellomycetes Agaricomycetidae Ustilaginomycotina Agaricomycotina
Table 1. Support <strong>for</strong> major groups of Fungi in selected phylogenetic studies: Basal Fungi and Dikarya. Rank: K = kingdom, SK = subkingdom, P = phylum, SP = subphylum, C = class, SC = subclass, O = order, G = genus. Taxa with only one subsidiary taxon included (i.e., redundant taxa) are listed on a single line, with rank abbreviations divided by a slash (e.g., the class Agaricostilbomycetes, which contains a single order, Agaricostilbales, is indicated as C/O). Data: lsu, ssu, and 5.8S refer to nuclear rRNA genes, whereas mt-lsu and mt-ssu refer to mitochondrial rRNA genes, other genes follow standard abbreviations. Some datasets contain missing sequences. OTUs: indicates the number of OTUs in the specified clade, not the total number of OTUs in the dataset. Support: bs = bootstrap %, jk = jackknife %, MP = maximum parsimony (equally weighted), WP = weighted parsimony, NJ = neighbor joining, ML = maximum likelihood, RML = RaxML, PML = PhyML, ME = minimum evolution, Bpp = Bayesian posterior probability, NA = not applicable because the group is monotypic, or only a single species was sampled in the reference study. Rank Taxon Reference Data OTUs Support K FUNGI Keeling (2003) α-tub, β-tub 38 MLbs = 98 NJbs = 94 Baldauf et al. (2000) act, α-tub, β-tub, 12 MLbs = 85 tef1 MPbs = 95 P CHYTRIDIOMYCOTA James et al. (2007) lsu, ssu, 5.8S 84 Bpp > 0.95 Seif et al. (2005) mt-genome 5 Bpp = 1.00 MLbs = 100 C Chytridiomycetes James et al. (2006) lsu, ssu, 5.8S, 8 Bpp > 0.95 rpb1, rpb2, tef1 MLbs > 70 James et al. (2007) lsu, ssu, 5.8S 75 Bpp > 0.95 MLbs > 70 Keeling (2003) α-tub, β-tub 5 MLbs = 90 NJbs = 95 9 MLbs = 98 lsu, ssu, 5.8S, rpb1, rpb2, tef1,Atp6 O Chytridiales James et al. (unpublished) O Rhizophydiales James et al. (2006) lsu, ssu, 5.8S, 2 Bpp > 0.95 rpb1, rpb2, tef1 MLbs > 70 Letcher et al. (2006) lsu, 5.8S 96 MPbs=100 Bpp = 1.00 O Spizellomycetales James et al. (2007) lsu, ssu, 5.8S 9 MPbs = 100 C/O Monoblepharidomycetes, Monoblepharidales James et al. (2007) lsu, ssu, 5.8S 9 Bpp > 0.95 MLbs > 70 MPbs > 70 Bullerwell et al. (2003) cox 1,2,3; cob, 4 MLbs = 100 atp6,9; nad 1,2,3,4, 4L,6
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Elsevier Editorial System(tm) for M
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Cover Letter February 8, 2007 Dr. D
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A higher-level phylogenetic classif
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18 Institute of Applied Ecology, Ch
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47 Systematic Mycology and Lichenol
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classifications. Two important work
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promote communication and awareness
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summarized in Tables 1-3, which lis
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Pucciniomycotina, and Ustilaginomyc
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Many of the citations and authoriti
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Class: Chytridiomycetes Caval.-Sm.,
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ibosomal aggregation, and rumposome
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Synonym: Allomycetes Caval.-Sm., Bi
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Order: Paraglomerales C. Walker & A
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Fungi pathogenici obligate animalib
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Synonym: Zoopagales Bessey, Morph.
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Unicellular or filamentous Fungi, l
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Class: Pneumocystidomycetes O. E. E
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Order: Dothideales Lindau, in Engle
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Lichenized, parasitic, and saprobic
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Order: Onygenales Cif. ex Benny & K
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vel infirme ramosae, septatae, medi
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Exemplar genera: Coccocarpia Pers.
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Lecanoromycetes incertae sedis (not
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Based on current character and taxo
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Order: Coronophorales Nannf., Nova
Page 53 and 54: Order: Coniochaetales Huhndorf, A.
Page 55 and 56: Exemplar genera: Huangshania O. E.
Page 57 and 58: Order: Cystobasidiales R. Bauer, Be
Page 59 and 60: Exemplar genera: Microbotryum Lév.
Page 61 and 62: Class: Ustilaginomycetes R. Bauer,
Page 63 and 64: Emend. Bauer, Oberwinkler & Vánky,
Page 65 and 66: Order: Cystofilobasidiales Fell, Ro
Page 67 and 68: Order: Agaricales Underw., Moulds,
Page 69 and 70: phylogenetics of Cantharellales. An
Page 71 and 72: cylindrical or suballantoid, with t
Page 73 and 74: subicular hyphae with or without am
Page 75 and 76: REFERENCES 1 Adl SM, Simpson AGB, F
Page 77 and 78: Begerow D, Bauer R, Oberwinkler F,
Page 79 and 80: Clements FE, Shear CL. 1931. The Ge
Page 81 and 82: Galagan JE, Henn MR, Ma L-J, Cuomo
Page 83 and 84: Lecanoromycetes (Ascomycota). Molec
Page 85 and 86: Keeling PJ, 2003. Congruent evidenc
Page 87 and 88: Lindau G, 1896. Hysteriineae. In: E
Page 89 and 90: Margulis L, Corliss JO, Melkonian M
Page 92 and 93: Nannfeldt JA, 1932. Studien über d
Page 94 and 95: Sampaio JP, Gadanho M, Bauer R, Wei
Page 96 and 97: Sugiyama J, Hosaka K, Suh S-O, 2007
Page 98 and 99: Glomeromycota. Mycological Research
Page 100 and 101: Sordariomycetes systematics: An ove
Page 102 and 103: MICROSPORIDIA Kickxellales Dimargar
Page 106 and 107: James et al. (2007) lsu, ssu, 5.8S
Page 108 and 109: Table 2. Support for major groups o
Page 110 and 111: MPbs < 50 SC Dothideomycetidae Scho
Page 112 and 113: 4 Bpp = 1.00 MLbs = 100 WPbs > 70 9
Page 114 and 115: pb2, tef1 MLbs = 93 Bpp = 1.00 Miad
Page 116 and 117: Reeb et al. (2004, fig. 1) lsu, ssu
Page 118 and 119: tef1 WPbs = 96 MLbs = 90 Bpp = 1.00
Page 120 and 121: Bpp = 1.00 Miller & Huhndorf (2005,
Page 122 and 123: Table 3. Support for major groups o
Page 124 and 125: Sampaio (2004, fig. 1) lsu 7 Bpp =
Page 126 and 127: O Ustilaginales Matheny et al. (200
Page 128 and 129: pb2, tef1 MPbs = 50-69 Fell et al.
Page 130: Larsson et al. (2007, fig. 3) lsu,
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