33 Division of Natural Sciences, Mathematics, and Engineering, Middle Georgia College, 1100 Second Street, SE, Cochran, GA 31014-1599, USA 34 Institute of Agricultural and Environmental Sciences, Estonian <strong>University</strong> of Life Sciences, 181 Riia Street Tartu, 51014, Estonia 35 Depar<strong>tm</strong>ent of Plant Pathology, Washington State <strong>University</strong>, P.O. Box 646430, Pullman, WA 99164-6430, USA 36 Chemin des Vignes vielles, 84120, Mirabeau, France 37 Botanical Institute, <strong>University</strong> of Oslo, P.O. Box 1066, Blindern, N-0316 Oslo, Norway 38 CREM, SABT, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal 39 Genetics Institute, Depar<strong>tm</strong>ent Biology I, Maria-Ward-Strasse 1a, D-80638 Munich, Germany 40 TechnoSuruga Co. Ltd, Tokyo Office, Ogawamachi Kita Building 4F, 1-8-3, Kanda Ogawamachi, Chiyoda-ku, Tokyo 101-0052, Japan 41 Depar<strong>tm</strong>ent of Biology, <strong>University</strong> of Western Ontario, 213 Biological and Geological Sciences Building, 1151 Richmond Street North, London, ON, N6A 5B7, Canada 42 Depar<strong>tm</strong>ent of <strong>System</strong>atic Botany, Evolutionary Biology Centre, Uppsala <strong>University</strong>, Norbyvägen 18 D, SE-752 36, Uppsala, Sweden 43 Botany Depar<strong>tm</strong>ent, Brandon <strong>University</strong>, 270-18th Street, Brandon, MB R7A 6A9, Canada 44 Biological Research and Imaging Laboratory, 2 Penny Hedge, New Milton, Hampshire BH25 7TB, UK 45 Faculty of Environmental and Forest Biology, SUNY College, 242 Illick Hall, 1 Forestry Drive, Syracuse, NY 13210, USA 46 Depar<strong>tm</strong>ent of Biology, Boise State <strong>University</strong>, 1910 <strong>University</strong> Drive, S/N Building, Room 210, Boise, ID 83725-1515, USA 4
47 <strong>System</strong>atic Mycology and Lichenology Laboratory, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, China 48 Depar<strong>tm</strong>ent of Plant Pathology, Cornell <strong>University</strong>, Geneva, NY 14456, USA *Corresponding author. E-mail address: dhibbett@clarku.edu Telephone: 1-508-793-7332 Fax: 1-508-793-7174 ABSTRACT A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 19 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Agaricomycetes, Dacrymycetes, Monoblepharidomycetes, Neocallimastigomycetes, Tremellomycetes class. nov.; Eurotiomycetidae, Lecanoromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa 5
- Page 1 and 2: Elsevier Editorial System(tm) for M
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- Page 23 and 24: ibosomal aggregation, and rumposome
- Page 25 and 26: Synonym: Allomycetes Caval.-Sm., Bi
- Page 27 and 28: Order: Paraglomerales C. Walker & A
- Page 29 and 30: Fungi pathogenici obligate animalib
- Page 31 and 32: Synonym: Zoopagales Bessey, Morph.
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- Page 35 and 36: Class: Pneumocystidomycetes O. E. E
- Page 37 and 38: Order: Dothideales Lindau, in Engle
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- Page 41 and 42: Order: Onygenales Cif. ex Benny & K
- Page 43 and 44: vel infirme ramosae, septatae, medi
- Page 45 and 46: Exemplar genera: Coccocarpia Pers.
- Page 47 and 48: Lecanoromycetes incertae sedis (not
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- Page 51 and 52: Order: Coronophorales Nannf., Nova
- Page 53 and 54: Order: Coniochaetales Huhndorf, A.
- Page 55 and 56: Exemplar genera: Huangshania O. E.
- Page 57 and 58: Order: Cystobasidiales R. Bauer, Be
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Exemplar genera: Microbotryum Lév.
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Class: Ustilaginomycetes R. Bauer,
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Emend. Bauer, Oberwinkler & Vánky,
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Order: Cystofilobasidiales Fell, Ro
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Order: Agaricales Underw., Moulds,
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phylogenetics of Cantharellales. An
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cylindrical or suballantoid, with t
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subicular hyphae with or without am
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MICROSPORIDIA Kickxellales Dimargar
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Agaricostilbales Agaricostilbomycet
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James et al. (2007) lsu, ssu, 5.8S
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Table 2. Support for major groups o
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MPbs < 50 SC Dothideomycetidae Scho
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4 Bpp = 1.00 MLbs = 100 WPbs > 70 9
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pb2, tef1 MLbs = 93 Bpp = 1.00 Miad
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Reeb et al. (2004, fig. 1) lsu, ssu
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tef1 WPbs = 96 MLbs = 90 Bpp = 1.00
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Bpp = 1.00 Miller & Huhndorf (2005,
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Table 3. Support for major groups o
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Sampaio (2004, fig. 1) lsu 7 Bpp =
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O Ustilaginales Matheny et al. (200
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pb2, tef1 MPbs = 50-69 Fell et al.
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Larsson et al. (2007, fig. 3) lsu,