• I hope you will not mind, but I deleted the text <strong>for</strong>merly on p. 10 that explained that taxa such as Hyphomycetes and Coelomycetes are no longer needed. Instead, I simply noted that the classification is restricted to Fungi…including sexual and asexual <strong>for</strong>ms.” I think that the text as worded could have been interpreted (justly or otherwise) as implying that all names based on asexual <strong>for</strong>ms at any rank are superfluous, and that is a swamp that I do want to wade into at this time. • I gather that you are seeing boxes around the references <strong>for</strong> Ekman and Tønsberg (2002) and Suh et al. (2007). I’m afraid that I don’t see them, and there<strong>for</strong>e cannot remove them. Perhaps this is a Mac-PC compatibility issue in MS Word? • Your queries inserted in the text have been removed. I hope that these revisions are adequate. Again, thank you very much <strong>for</strong> considering this ms <strong>for</strong> publication in <strong>Mycological</strong> Research. Sincerely, David S. Hibbett Associate Professor Tel.: (508) 793-7332 Fax: (508) 793-7174 E-mail: dhibbett@clarku.edu Lab homepage: http://www.clarku.edu/faculty/dhibbett/index.h<strong>tm</strong>l
A higher-level phylogenetic classification of the Fungi David S. HIBBETT 1 , Manfred BINDER 1 , Joseph F. BISCHOFF 2 , Meredith BLACKWELL 3 , Paul F. CANNON 4 , Ove E. ERIKSSON 5 , Sabine HUHNDORF 6 , Timothy JAMES 7 , Paul M. KIRK 4 , Robert LÜCKING 6 , Thorsten LUMBSCH 6 , François LUTZONI 7 , P. Brandon MATHENY 1 , David J. MCLAUGHLIN 8 , Martha J. POWELL 9 , Scott REDHEAD 10 , Conrad L. SCHOCH 11 , Joseph W. SPATAFORA 11 , Joost A. STALPERS 12 , Rytas VILGALYS 7 , M. Catherine AIME 13 , André APTROOT 14 , Robert BAUER 15 , Dominik BEGEROW 16 , Gerald L. BENNY 17 , Lisa A. CASTLEBURY 13 , Pedro W. CROUS 12 , Yu-Cheng DAI 18 , Walter GAMS 12 , David M. GEISER 19 , Gareth W. GRIFFITH 20 , Cécile GUEIDAN 7 , David L. HAWKSWORTH 21 , Geir HESTMARK 22 , Kentaro HOSAKA 23 , Richard A. HUMBER 24 , Kevin HYDE 25 , Joseph E. IRONSIDE 20 , Urmas KÕLJALG 26 , Cletus P. KURTZMAN 27 , Karl-Henrik LARSSON 28 , Robert LICHTWARDT 29 , Joyce LONGCORE 30 , Jolanta MIĄDLIKOWSKA 7 , Andrew MILLER 31 , Jean-Marc MONCALVO 32 , Sharon MOZLEY-STANDRIDGE 33 , Franz OBERWINKLER 15 , Erast PARMASTO 34 , Valérie REEB 7 , Jack D. ROGERS 35 , Claude ROUX 36 , Leif RYVARDEN 37 , José Paulo SAMPAIO 38 , Arthur SCHUESSLER 39 , Junta SUGIYAMA 40 , R. Greg THORN 41 , Leif TIBELL 42 , Wendy A. UNTEREINER 43 , Christopher WALKER 44 , Zheng WANG 1 , Alex WEIR 45 , Michael WEISS 15 , Merlin M. WHITE 46 , Katarina WINKA 5 , Yi- Jian YAO 47 , Ning ZHANG 48 1 Biology Depar<strong>tm</strong>ent, <strong>Clark</strong> <strong>University</strong>, Worcester, MA 01610, USA 2 National Library of Medicine, National Center <strong>for</strong> Biotechnology In<strong>for</strong>mation, 45 Center Drive, Bethesda, MD 20892-6510, USA 3 Depar<strong>tm</strong>ent of Biological Sciences, Louisiana State <strong>University</strong>, Baton Rouge, LA 70803, USA
- Page 1 and 2: Elsevier Editorial System(tm) for M
- Page 3: Cover Letter February 8, 2007 Dr. D
- Page 7 and 8: 18 Institute of Applied Ecology, Ch
- Page 9 and 10: 47 Systematic Mycology and Lichenol
- Page 11 and 12: classifications. Two important work
- Page 13 and 14: promote communication and awareness
- Page 15 and 16: summarized in Tables 1-3, which lis
- Page 17 and 18: Pucciniomycotina, and Ustilaginomyc
- Page 19 and 20: Many of the citations and authoriti
- Page 21 and 22: Class: Chytridiomycetes Caval.-Sm.,
- Page 23 and 24: ibosomal aggregation, and rumposome
- Page 25 and 26: Synonym: Allomycetes Caval.-Sm., Bi
- Page 27 and 28: Order: Paraglomerales C. Walker & A
- Page 29 and 30: Fungi pathogenici obligate animalib
- Page 31 and 32: Synonym: Zoopagales Bessey, Morph.
- Page 33 and 34: Unicellular or filamentous Fungi, l
- Page 35 and 36: Class: Pneumocystidomycetes O. E. E
- Page 37 and 38: Order: Dothideales Lindau, in Engle
- Page 39 and 40: Lichenized, parasitic, and saprobic
- Page 41 and 42: Order: Onygenales Cif. ex Benny & K
- Page 43 and 44: vel infirme ramosae, septatae, medi
- Page 45 and 46: Exemplar genera: Coccocarpia Pers.
- Page 47 and 48: Lecanoromycetes incertae sedis (not
- Page 49 and 50: Based on current character and taxo
- Page 51 and 52: Order: Coronophorales Nannf., Nova
- Page 53 and 54: Order: Coniochaetales Huhndorf, A.
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Exemplar genera: Huangshania O. E.
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Order: Cystobasidiales R. Bauer, Be
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Exemplar genera: Microbotryum Lév.
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Class: Ustilaginomycetes R. Bauer,
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Emend. Bauer, Oberwinkler & Vánky,
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Order: Cystofilobasidiales Fell, Ro
- Page 67 and 68:
Order: Agaricales Underw., Moulds,
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phylogenetics of Cantharellales. An
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cylindrical or suballantoid, with t
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subicular hyphae with or without am
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REFERENCES 1 Adl SM, Simpson AGB, F
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Begerow D, Bauer R, Oberwinkler F,
- Page 79 and 80:
Clements FE, Shear CL. 1931. The Ge
- Page 81 and 82:
Galagan JE, Henn MR, Ma L-J, Cuomo
- Page 83 and 84:
Lecanoromycetes (Ascomycota). Molec
- Page 85 and 86:
Keeling PJ, 2003. Congruent evidenc
- Page 87 and 88:
Lindau G, 1896. Hysteriineae. In: E
- Page 89 and 90:
Margulis L, Corliss JO, Melkonian M
- Page 92 and 93:
Nannfeldt JA, 1932. Studien über d
- Page 94 and 95:
Sampaio JP, Gadanho M, Bauer R, Wei
- Page 96 and 97:
Sugiyama J, Hosaka K, Suh S-O, 2007
- Page 98 and 99:
Glomeromycota. Mycological Research
- Page 100 and 101:
Sordariomycetes systematics: An ove
- Page 102 and 103:
MICROSPORIDIA Kickxellales Dimargar
- Page 104 and 105:
Agaricostilbales Agaricostilbomycet
- Page 106 and 107:
James et al. (2007) lsu, ssu, 5.8S
- Page 108 and 109:
Table 2. Support for major groups o
- Page 110 and 111:
MPbs < 50 SC Dothideomycetidae Scho
- Page 112 and 113:
4 Bpp = 1.00 MLbs = 100 WPbs > 70 9
- Page 114 and 115:
pb2, tef1 MLbs = 93 Bpp = 1.00 Miad
- Page 116 and 117:
Reeb et al. (2004, fig. 1) lsu, ssu
- Page 118 and 119:
tef1 WPbs = 96 MLbs = 90 Bpp = 1.00
- Page 120 and 121:
Bpp = 1.00 Miller & Huhndorf (2005,
- Page 122 and 123:
Table 3. Support for major groups o
- Page 124 and 125:
Sampaio (2004, fig. 1) lsu 7 Bpp =
- Page 126 and 127:
O Ustilaginales Matheny et al. (200
- Page 128 and 129:
pb2, tef1 MPbs = 50-69 Fell et al.
- Page 130:
Larsson et al. (2007, fig. 3) lsu,