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Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotina. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of "basal" Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella.
Cover Letter February 8, 2007 Dr. David L. Hawksworth Chief Executive Editor Mycological Research Dear David: Please find enclosed the revised version of our manuscript titled “A Higher-Level Phylogenetic Classification of the Fungi”, intended for Mycological Research. Thank you very much for moving ahead so promptly with the review of our original submission, and also for your careful editing. Thanks to your work, and that of many other coauthors, there have been numerous minor corrections, updates to the literature, etc. Below, I describe the major changes that have appeared since you last handled the ms: • Table 1 has been separated into three separate tables. • Figure 1 has been separated into three separate figures. I did not replace these with color versions, but if you think that would improve clarity, then I will be happy to do so. • MycoBank numbers have been provided for all new taxa (thanks to Joost Stalpers). • John Taylor and Valerie Hofstetter decided they should not be listed as coauthors. • Claude Roux, Jolanta Miadlikowska, Valerie Reeb, Cecile Gueidan, and Jospeh Ironside have been added as coauthors. • It was discovered that Agaricomycetidae was described by Parmasto (1986), so that is no longer listed as a new taxon, and the abstract and main text have been modified accordingly. I inserted some comments regarding the different delimitations of Agaricomycetidae in the present work vs. Parmasto (1986). • The citation for Chytridiomycetes was revised to Caval.-Sm. (1998). This is not an easy problem. I consulted the de Bary (1863) volume that was cited and it does not contain Chytridiomycetes (I looked at every page and checked the index). The text cites the usage of this name inSerbinow (1907), Cejp (1957), Sparrow (1958), and Alexopoulos et al. (1996). I also included a note directing readers to David (2002), which contains more information about the history of this name. • Bibliographic information has been filled in for Fischer (“1891”), Schröter (1889), and Winter (1880). However, I was not able to find the Corner citation for Thelephorales. The Oberwinkler citation should be adequate, I think. • References to Mycologia 98(6) have been changed from 2006 to 2007, including the tables. However, I have not included page numbers for this issue, because it is quite possible that repagination will be needed after corrections of errors that remained in the proofs. I will add page numbers for this issue at the proof stage.
Page 1: Elsevier Editorial System(tm) for M
Page 5 and 6: A higher-level phylogenetic classif
Page 7 and 8: 18 Institute of Applied Ecology, Ch
Page 9 and 10: 47 Systematic Mycology and Lichenol
Page 11 and 12: classifications. Two important work
Page 13 and 14: promote communication and awareness
Page 15 and 16: summarized in Tables 1-3, which lis
Page 17 and 18: Pucciniomycotina, and Ustilaginomyc
Page 19 and 20: Many of the citations and authoriti
Page 21 and 22: Class: Chytridiomycetes Caval.-Sm.,
Page 23 and 24: ibosomal aggregation, and rumposome
Page 25 and 26: Synonym: Allomycetes Caval.-Sm., Bi
Page 27 and 28: Order: Paraglomerales C. Walker & A
Page 29 and 30: Fungi pathogenici obligate animalib
Page 31 and 32: Synonym: Zoopagales Bessey, Morph.
Page 33 and 34: Unicellular or filamentous Fungi, l
Page 35 and 36: Class: Pneumocystidomycetes O. E. E
Page 37 and 38: Order: Dothideales Lindau, in Engle
Page 39 and 40: Lichenized, parasitic, and saprobic
Page 41 and 42: Order: Onygenales Cif. ex Benny & K
Page 43 and 44: vel infirme ramosae, septatae, medi
Page 45 and 46: Exemplar genera: Coccocarpia Pers.
Page 47 and 48: Lecanoromycetes incertae sedis (not
Page 49 and 50: Based on current character and taxo
Page 51 and 52: Order: Coronophorales Nannf., Nova
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Order: Coniochaetales Huhndorf, A.
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Exemplar genera: Huangshania O. E.
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Order: Cystobasidiales R. Bauer, Be
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Exemplar genera: Microbotryum Lév.
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Class: Ustilaginomycetes R. Bauer,
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Emend. Bauer, Oberwinkler & Vánky,
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Order: Cystofilobasidiales Fell, Ro
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Order: Agaricales Underw., Moulds,
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phylogenetics of Cantharellales. An
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cylindrical or suballantoid, with t
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subicular hyphae with or without am
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REFERENCES 1 Adl SM, Simpson AGB, F
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Begerow D, Bauer R, Oberwinkler F,
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Clements FE, Shear CL. 1931. The Ge
Page 81 and 82:
Galagan JE, Henn MR, Ma L-J, Cuomo
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Lecanoromycetes (Ascomycota). Molec
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Keeling PJ, 2003. Congruent evidenc
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Lindau G, 1896. Hysteriineae. In: E
Page 89 and 90:
Margulis L, Corliss JO, Melkonian M
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Nannfeldt JA, 1932. Studien über d
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Sampaio JP, Gadanho M, Bauer R, Wei
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Sugiyama J, Hosaka K, Suh S-O, 2007
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Glomeromycota. Mycological Research
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Sordariomycetes systematics: An ove
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MICROSPORIDIA Kickxellales Dimargar
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Agaricostilbales Agaricostilbomycet
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James et al. (2007) lsu, ssu, 5.8S
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Table 2. Support for major groups o
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MPbs < 50 SC Dothideomycetidae Scho
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4 Bpp = 1.00 MLbs = 100 WPbs > 70 9
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pb2, tef1 MLbs = 93 Bpp = 1.00 Miad
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Reeb et al. (2004, fig. 1) lsu, ssu
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tef1 WPbs = 96 MLbs = 90 Bpp = 1.00
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Bpp = 1.00 Miller & Huhndorf (2005,
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Table 3. Support for major groups o
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Sampaio (2004, fig. 1) lsu 7 Bpp =
Page 126 and 127:
O Ustilaginales Matheny et al. (200
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pb2, tef1 MPbs = 50-69 Fell et al.
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Larsson et al. (2007, fig. 3) lsu,
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