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60<br />

ANA LUISA ANAYA<br />

characteristics and herbicide and insect resistance. Additional commercial applications<br />

of genomics in weed science will be identification of genes involved in crop ability.<br />

Genes controlling early crop root emergence, rapid early-season leaf and root<br />

development for fast canopy closure, production of allelochemicals for natural weed<br />

control, identification of novel herbicide target sites, resistance mechanisms, and genes<br />

for protecting crops against specific herbicides can and will be identified. Successful<br />

crop improvement in these areas using the tools of genomics will dramatically affect<br />

weed-crop interactions and improve crop yields while reducing weed problems. In<br />

relation to improved basic knowledge of weeds and the resulting ability to improve<br />

our weed management techniques, genomics will offer the weed science community<br />

many new and exciting research opportunities. Scientists will be able to determine<br />

the genetic composition of weed populations and how it changes over time in relation<br />

to agricultural practices, Identification of genes contributing to weediness, perennial<br />

growth habit, herbicide resistance, seed and vegetative structure dormancy, plant<br />

architecture and morphology, plant reproductive characters (outcrossing and<br />

hybridization, introgression), and allelopathy will be identified and utilized with highthroughput<br />

DNA sequencing and other genomics-based technologies. Using genomics<br />

to improve our understanding of weed biology by determining which genes function<br />

to affect the fitness, competitiveness, and adaptation of weeds in agricultural<br />

environments will allow the development of improved management strategies.<br />

Information is provided concerning the current state of molecular research in various<br />

areas of weed science and specific genomic research currently being conducted at<br />

Purdue University using transfer DNA (TDNA) activation tagging to generate large<br />

populations of mutated plants that can be screened for genes of importance to weed<br />

science (Weller et al., 2001).<br />

6. SUPPRESSIVE SOILS<br />

When soils are characterized by a very low level of disease development even though<br />

a virulent pathogen and susceptible host are present, they are known as suppressive<br />

soils. Biotic and abiotic elements of the soil environment contribute to suppressiveness,<br />

however most defined systems have identified biological elements as primary factors<br />

in disease suppression. Many soils possess similarities with regard to microorganisms<br />

involved in disease suppression, while other attributes are unique to specific pathogensuppressive<br />

soil systems. The organisms’ operative in pathogen suppression does so<br />

via diverse mechanisms including competition for nutrients, antibiosis and induction<br />

of host resistance (Mazzola, 2002). Non-pathogenic Fusarium spp. and fluorescent<br />

Pseudomonas spp. play a critical role in naturally occurring soils that are suppressive<br />

to Fusarium wilt. Suppression of take-all of wheat, caused by Gaeumannomyces<br />

graminis var. tritici, is induced in soil after continuous wheat monoculture and is<br />

attributed, in part, to selection of fluorescent pseudomonads with capacity to produce<br />

the antibiotic 2,4-diacetylphloroglucinol. Cultivation of orchard soils with specific<br />

wheat varieties induces suppressiveness to Rhizoctonia root rot of apple caused by<br />

Rhizoctonia solani AG 5. Wheat cultivars that stimulate disease suppression enhance

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