LIFE09200604007 Tabish - Homi Bhabha National Institute

More documents

Recommendations

Info

Bibliography 183. Bergamaschi, D.; Gasco, M.; Hiller, L.; Sullivan, A.; Syed, N.; Trigiante, G.; Yulug, I.; Merlano, M.; Numico, G.; Comino, A.; Attard, M.; Reelfs, O.; Gusterson, B.; Bell, A. K.; Heath, V.; Tavassoli, M.; Farrell, P. J.; Smith, P.; Lu, X.; Crook, T., p53 polymorphism influences response in cancer chemotherapy via modulation of p73-dependent apoptosis. Cancer Cell 2003, 3, (4), 387-402. 184. Ji, X.; Neumann, A. S.; Sturgis, E. M.; Adler-Storthz, K.; Dahlstrom, K. R.; Schiller, J. T.; Wei, Q.; Li, G., p53 codon 72 polymorphism associated with risk of human papillomavirus-associated squamous cell carcinoma of the oropharynx in never-smokers. Carcinogenesis 2008, 29, (4), 875- 9. 185. Zhang, Y.; Sturgis, E. M.; Huang, Z.; Zafereo, M. E.; Wei, Q.; Li, G., Genetic variants of the p53 and p73 genes jointly increase risk of second primary malignancies in patients after index squamous cell carcinoma of the head and neck. Cancer 2012, 118, (2), 485-92. 186. Facher, E. A.; Becich, M. J.; Deka, A.; Law, J. C., Association between human cancer and two polymorphisms occurring together in the p21Waf1/Cip1 cyclin-dependent kinase inhibitor gene. Cancer 1997, 79, (12), 2424-9. 187. Li, G.; Liu, Z.; Sturgis, E. M.; Shi, Q.; Chamberlain, R. M.; Spitz, M. R.; Wei, Q., Genetic polymorphisms of p21 are associated with risk of squamous cell carcinoma of the head and neck. Carcinogenesis 2005, 26, (9), 1596-602. 188. Hong, W. K.; Lippman, S. M.; Itri, L. M.; Karp, D. D.; Lee, J. S.; Byers, R. M.; Schantz, S. P.; Kramer, A. M.; Lotan, R.; Peters, L. J.; et al., Prevention of second primary tumors with isotretinoin in squamous-cell carcinoma of the head and neck. N Engl J Med 1990, 323, (12), 795- 801. 189. Kudoh, A.; Fujita, M.; Zhang, L.; Shirata, N.; Daikoku, T.; Sugaya, Y.; Isomura, H.; Nishiyama, Y.; Tsurumi, T., Epstein-Barr virus lytic replication elicits ATM checkpoint signal transduction while providing an S-phase-like cellular environment. J Biol Chem 2005, 280, (9), 8156-63. 190. Li, F.; Sturgis, E. M.; Zafereo, M. E.; Liu, Z.; Wang, L. E.; Wei, Q.; Li, G., p73 G4C14-to-A4T14 polymorphism and risk of second primary malignancy after index squamous cell carcinoma of head and neck. Int J Cancer 2009, 125, (11), 2660-5. 191. Li, F.; Sturgis, E. M.; Chen, X.; Zafereo, M. E.; Wei, Q.; Li, G., Association of p53 codon 72 polymorphism with risk of second primary malignancy in patients with squamous cell carcinoma of the head and neck. Cancer 2010, 116, (10), 2350-9. 192. Lei, D.; Sturgis, E. M.; Liu, Z.; Zafereo, M. E.; Wei, Q.; Li, G., Genetic polymorphisms of p21 and risk of second primary malignancy in patients with index squamous cell carcinoma of the head and neck. Carcinogenesis 2010, 31, (2), 222-7. 193. Zhang, Y.; Sturgis, E. M.; Huang, Z.; Zafereo, M. E.; Wei, Q.; Li, G., Genetic variants of the p53 and p73 genes jointly increase risk of second primary malignancies in patients after index squamous cell carcinoma of the head and neck. Cancer 2012, 118, (2), 485-92. 194. Cianciulli, A.; Venturo, I.; Leonardo, F.; Antonaci, S.; Greco, C.; Lopez, M.; Gandolfo, G., Mutagen sensitivity and cancer susceptibility in patients with multiple primary cancers. Oncol Rep 1995, 2, (6), 1021-5. 195. Brown, S. R.; Finan, P. J.; Hall, N. R.; Bishop, D. T., Incidence of DNA replication errors in patients with multiple primary cancers. Dis Colon Rectum 1998, 41, (6), 765-9. 196. Miller, D. G.; Tiwari, R.; Pathak, S.; Hopwood, V. L.; Gilbert, F.; Hsu, T. C., DNA repair and mutagen sensitivity in patients with triple primary cancers. Cancer Epidemiol Biomarkers Prev 1998, 7, (4), 321-7. 197. Orlow, I.; Park, B. J.; Mujumdar, U.; Patel, H.; Siu-Lau, P.; Clas, B. A.; Downey, R.; Flores, R.; Bains, M.; Rizk, N.; Dominguez, G.; Jani, J.; Berwick, M.; Begg, C. B.; Kris, M. G.; Rusch, V. W., DNA damage and repair capacity in patients with lung cancer: prediction of multiple primary tumors. J Clin Oncol 2008, 26, (21), 3560-6. 198. Schantz, S. P.; Spitz, M. R.; Hsu, T. C., Mutagen sensitivity in patients with head and neck cancers: a biologic marker for risk of multiple primary malignancies. J Natl Cancer Inst 1990, 82, (22), 1773-5. 159
Bibliography 199. Spitz, M. R.; Hoque, A.; Trizna, Z.; Schantz, S. P.; Amos, C. I.; King, T. M.; Bondy, M. L.; Hong, W. K.; Hsu, T. C., Mutagen sensitivity as a risk factor for second malignant tumors following malignancies of the upper aerodigestive tract. J Natl Cancer Inst 1994, 86, (22), 1681- 4. 200. Kuligina, E.; Reiner, A.; Imyanitov, E. N.; Begg, C. B., Evaluating cancer epidemiologic risk factors using multiple primary malignancies. Epidemiology 2011, 21, (3), 366-72. 201. Zheng, Y. L.; Kosti, O.; Loffredo, C. A.; Bowman, E.; Mechanic, L.; Perlmutter, D.; Jones, R.; Shields, P. G.; Harris, C. C., Elevated lung cancer risk is associated with deficiencies in cell cycle checkpoints: genotype and phenotype analyses from a case-control study. Int J Cancer 2010, 126, (9), 2199-210. 202. Strom, S. S.; Wu, S.; Sigurdson, A. J.; Hsu, T. C.; Fueger, J. J.; Lopez, J.; Tee, P. G.; Spitz, M. R., Lung cancer, smoking patterns, and mutagen sensitivity in Mexican-Americans. J Natl Cancer Inst Monogr 1995, (18), 29-33. 203. Zhang, H.; Buchholz, T. A.; Hancock, D.; Spitz, M. R.; Wu, X., Gamma-radiation-induced single cell DNA damage as a measure of susceptibility to lung cancer: a preliminary report. Int J Oncol 2000, 17, (2), 399-404. 204. Buchholz, T. A.; Wu, X., Radiation-induced chromatid breaks as a predictor of breast cancer risk. Int J Radiat Oncol Biol Phys 2001, 49, (2), 533-7. 205. Takebayashi, S.; Ogawa, T.; Jung, K. Y.; Muallem, A.; Mineta, H.; Fisher, S. G.; Grenman, R.; Carey, T. E., Identification of new minimally lost regions on 18q in head and neck squamous cell carcinoma. Cancer Res 2000, 60, (13), 3397-403. 206. Thierfelder, N.; Demuth, I.; Burghardt, N.; Schmelz, K.; Sperling, K.; Chrzanowska, K. H.; Seemanova, E.; Digweed, M., Extreme variation in apoptosis capacity amongst lymphoid cells of Nijmegen breakage syndrome patients. Eur J Cell Biol 2008, 87, (2), 111-21. 207. Mazzei, F.; Guarrera, S.; Allione, A.; Simonelli, V.; Narciso, L.; Barone, F.; Minoprio, A.; Ricceri, F.; Funaro, A.; D'Errico, M.; Vogel, U.; Matullo, G.; Dogliotti, E., 8-Oxoguanine DNAglycosylase repair activity and expression: a comparison between cryopreserved isolated lymphocytes and EBV-derived lymphoblastoid cell lines. Mutat Res 2011, 718, (1-2), 62-7. 208. Holmen, A.; Karlsson, A.; Bratt, I.; Hogstedt, B., Micronuclei and mitotic index in B-, T4- and T8-cells treated with mitomycin C and gamma-irradiation. Mutat Res 1994, 309, (1), 93-9. 209. Vral, A.; Thierens, H.; Bryant, P.; De Ridder, L., A higher micronucleus yield in B-versus T-cells after low-dose gamma-irradiation is not linked with defective Ku86 protein. Int J Radiat Biol 2001, 77, (3), 329-39. 210. Delacote, F.; Lopez, B. S., Importance of the cell cycle phase for the choice of the appropriate DSB repair pathway, for genome stability maintenance: the trans-S double-strand break repair model. Cell Cycle 2008, 7, (1), 33-8. 211. Mayer, C.; Popanda, O.; Zelezny, O.; von Brevern, M. C.; Bach, A.; Bartsch, H.; Schmezer, P., DNA repair capacity after gamma-irradiation and expression profiles of DNA repair genes in resting and proliferating human peripheral blood lymphocytes. DNA Repair (Amst) 2002, 1, (3), 237-50. 212. Talebizadeh, Z.; Butler, M. G.; Theodoro, M. F., Feasibility and relevance of examining lymphoblastoid cell lines to study role of microRNAs in autism. Autism Res 2008, 1, (4), 240-50. 213. Herbeck, J. T.; Gottlieb, G. S.; Wong, K.; Detels, R.; Phair, J. P.; Rinaldo, C. R.; Jacobson, L. P.; Margolick, J. B.; Mullins, J. I., Fidelity of SNP array genotyping using Epstein Barr virustransformed B-lymphocyte cell lines: implications for genome-wide association studies. PLoS One 2009, 4, (9), e6915. 214. Londin, E. R.; Keller, M. A.; D'Andrea, M. R.; Delgrosso, K.; Ertel, A.; Surrey, S.; Fortina, P., Whole-exome sequencing of DNA from peripheral blood mononuclear cells (PBMC) and EBVtransformed lymphocytes from the same donor. BMC Genomics 2011, 12, 464. 215. Wei, Q.; Gu, J.; Cheng, L.; Bondy, M. L.; Jiang, H.; Hong, W. K.; Spitz, M. R., Benzo(a)pyrene diol epoxide-induced chromosomal aberrations and risk of lung cancer. Cancer Res 1996, 56, (17), 3975-9. 160
Page 1:
Genotype-Molecular Phenotype Correl
Page 7 and 8:
CONTENTS Page No Synopsis 1 List of
Page 9 and 10:
Synopsis
Page 11 and 12:
Synopsis Genotype-Molecular Phenoty
Page 13 and 14:
Synopsis Materials and Methods: 1.
Page 15 and 16:
Synopsis loading control. PCR produ
Page 17 and 18:
Synopsis 7.1 Percent cell death aft
Page 19 and 20:
Synopsis slides were then dried and
Page 21 and 22:
Synopsis range 41.77% - 90.95% at 5
Page 23 and 24:
Synopsis 5. Genotyping of genes: Ge
Page 25 and 26:
Synopsis G2/M arrest and delaying e
Page 27 and 28:
Synopsis may have an important bear
Page 29 and 30:
Synopsis References: 1. Bobba, R.;
Page 31 and 32:
Abbreviations MOPS : 3-(N-morpholin
Page 33 and 34:
List of Figures Fig. 28: Percent re
Page 35 and 36:
Chapter 1 Introduction
Page 37 and 38:
Introduction In previous studies fr
Page 39 and 40:
Introduction important carcinogenes
Page 41 and 42:
Review of Literature The yet undeci
Page 43 and 44:
Review of Literature Fig. 2: Incide
Page 45 and 46:
Review of Literature sustained angi
Page 47 and 48:
Review of Literature 2.6 Genotype p
Page 49 and 50:
Review of Literature 2.7.2 Biologic
Page 51 and 52:
Review of Literature Table 1: Steps
Page 53 and 54:
Review of Literature future analysi
Page 55 and 56:
Review of Literature Inefficient ce
Page 57 and 58:
Review of Literature XRCC1 (X-ray r
Page 59 and 60:
Review of Literature 2.9.2 Gene inv
Page 61 and 62:
Review of Literature MPO gene polym
Page 63 and 64:
Review of Literature important role
Page 65 and 66:
Materials and Methods Source of che
Page 67 and 68:
Materials and Methods Method: EBV-t
Page 69 and 70:
Materials and Methods Immunophenoty
Page 71 and 72:
Materials and Methods with 500 μl
Page 73 and 74:
Materials and Methods cDNA it can b
Page 75 and 76:
Materials and Methods Cobalt-60 iso
Page 77 and 78:
Materials and Methods specific bind
Page 79 and 80:
Materials and Methods h half of the
Page 81 and 82:
Materials and Methods phenol and th
Page 83 and 84:
Materials and Methods 7. Filter ste
Page 85 and 86:
Materials and Methods viz. EXO-SAP
Page 88 and 89:
Materials and Methods Table 2: List
Page 90 and 91:
Materials and Methods SMAD6 AREG HM
Page 92 and 93:
Materials and Methods 3.9 Effect of
Page 94 and 95:
Materials and Methods fresh eppendo
Page 96 and 97:
Materials and Methods Power SYBR Gr
Page 98 and 99:
Results Objective 1 To generate EBV
Page 100 and 101:
Results Fig. 8: Frequency of second
Page 102 and 103:
Results Table 6: Demographics of he
Page 104 and 105:
Results Fig. 10: Cell population do
Page 106 and 107:
Results Fig. 12: Cell surface marke
Page 108 and 109:
Results 4.1.5 Expression of ATM gen
Page 110 and 111:
Results Objective 2 To compare the
Page 112 and 113:
Results Fig. 17: Standardization of
Page 114 and 115:
Results Fig. 19: Standardisation of
Page 116 and 117:
Results The cells were incubated fu
Page 118 and 119:
Results 4.2.3.1 Percent G2 delay af
Page 120 and 121:
Results 4.2.3.2 Effect of BPDE expo
Page 122 and 123: Results Fig. 29: Comparison of perc
Page 124 and 125: Results Fig. 31: Percent cell death
Page 126 and 127: Results normalization with baseline
Page 128 and 129: Results 4.2.5.2 Real time PCR valid
Page 130 and 131: Results homozygous wild-type, heter
Page 132 and 133: Results Fig. 36b: Electrophoresis o
Page 134 and 135: Results Fig. 37a: Representative el
Page 136 and 137: Results Table 13: Consolidated geno
Page 138 and 139: Results LCL Genes NAT2(1) NAT2(2) N
Page 140 and 141: Results Fig. 38: Distribution of Ge
Page 142 and 143: Results Fig. 39: Various combinatio
Page 144 and 145: Results Table 14: Genotype-phenotyp
Page 146 and 147: Discussion Introduction Squamous ce
Page 148 and 149: Discussion stimulated lymphocytes w
Page 150 and 151: Discussion H2AX is currently the mo
Page 152 and 153: Discussion or G2/M phase arrest. As
Page 154 and 155: Discussion differential expression
Page 156 and 157: Discussion DNA repair genes and MPN
Page 158 and 159: Chapter 6 Summary and Conclusions
Page 160 and 161: Summary and Conclusions Statistical
Page 162 and 163: Bibliography 1. Dikshit, R.; Gupta,
Page 164 and 165: Bibliography 43. Lei, D.; Sturgis,
Page 166 and 167: Bibliography 76. Fry, R. C.; Svenss
Page 168 and 169: Bibliography 115. Kote-Jarai, Z.; M
Page 170 and 171: Bibliography 149. Hashibe, M.; Bren
Page 174 and 175: Bibliography 216. Bondy, M. L.; Wan
Page 176 and 177: Indian J Med Res 135, June 2012, pp
Page 178 and 179: 822 INDIAN J MED RES, JUNE 2012 mar
Page 180 and 181: 824 INDIAN J MED RES, JUNE 2012 (h)
Page 182 and 183: 826 INDIAN J MED RES, JUNE 2012 Tab
Page 184 and 185: 828 INDIAN J MED RES, JUNE 2012 lik
Page 186 and 187: CASE REPORT Eben L. Rosenthal, MD,
Page 188 and 189: FIGURE 2. Chromosomal breakage anal
Page 190 and 191: FA along with ataxia telangiectasia
show all

LIFE09200604007 Tabish - Homi Bhabha National Institute

Create successful ePaper yourself

Delete template?

Save as template?