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BIRC, BIOINFORMATICS RESEARCH CENTER Hollegaard, M, Grauholm, J, Børglum, A, Nyegaard, M, Nørgaard-Pedersen, B, Ørntoft, T, Mortensen, PB, Wiuf, C, Mors, O, Didriksen, M, Thorsen, P & Hougaard, DM 2009, ‘Genome-wide scans using archived neonatal dried blood spot samples’, BMC Genomics, vol. 10, s. 297. Høgslund, N, Radutoiu, S, Krusell, L, Voroshilova, V, Hannah, MA, Goffard, N, Sanchez, DH, Lippold, F, Ott, T, Sato, S, Tabata, S, Liboriussen, P, Lohmann, GV, Schauser, L, Weiller, GF, Udvardi, MK & Stougaard, J 2009, ‘Dissection of symbiosis and organ development by integrated transcriptome analysis of lotus japonicus mutant and wild-type plants’, PLoS ONE, vol. 4, nr. 8, s. 6556. Jørgensen, FG & Schierup, MH 2009, ‘Increased rate of human mutations where DNA and RNA polymerases collide’, Trends in Genetics, vol. 25, nr. 12, s. 523-527. Kristensen, LS, Wojdacz, TK, Thestrup, BB, Hager, H, Wiuf, CH & Hansen, LL 2009, ‘Quality assessment of DNA derived from up to 30 years old formalin fixed paraffin embedded (FFPE) tissue for PCRbased methylation analysis using SMART-MSP and MS-HRM’, BMC Cancer, vol. 9, nr. 453, s. 453. Li, J, Wang, K, Li, S, Timmermans-Wielenga, V, Rank, F, Wiuf, C, Zhang, X, Yang, H & Bolund, L 2009, ‘DNA copy number aberrations in breast cancer by array comparative genomic hybridization’, Genomics Proteomics & Bioinformatics, vol. 7, nr. 1-2, s. 13-24. Nielsen, J, Foldager, L & Meyer, JM 2009, ‘Increased use of antibiotics in patients treated with clozapine’, European Neuropsychopharmacology, vol. 19, nr. 7, s. 483-486. Pradal, C, Olesen, JM & Wiuf, CH 2009, ‘Temporal development and collapse of an Arctic plant-pollinator network’, BMC Ecology, vol. 9. Ratmann, O, Wiuf, CH & Pinney, JW 2009, ‘From evidence to inference: probing the evolution of protein interaction networks’, H F S P Journal, vol. 3, nr. 5, s. 290-306. Ratmann, O, Andrieu, C, Wiuf, CH & Richardson, S 2009, ‘Model criticism based on likelihood-free inference: with an application to protein network evolution’, Proceedings of the National Academy of Science of the United States of America, vol. 106, s. 10576-10581. Schierup, MH, Mailund, T, Li, H, Wang, J, Tjønneland, A, Vogel, U, Bolund, L & Nexø, BA 2009, ‘Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups’, BMC Medical Genetics, vol. 10, s. 20. Schoustra, SE, Bataillon, T, Gifford, DR & Kassen, R 2009, ‘The properties of adaptive walks in evolving populations of fungus’, PLoS - Biology, vol. 7, nr. 11, s. e1000250. Staunstrup, NH, Moldt, B, Mátés, L, Villesen, P, Jakobsen, M, Ivics, Z, Izsvák, Z & Mikkelsen, JG 2009, ‘Hybrid Lentivirus-transposon Vectors With a Random Integration Profile in Human Cells’, Molecular Therapy, vol. 17, nr. 7, s. 1205-1214. Wang, K, Li, J, Li, S, Bolund, L & Wiuf, C 2009, ‘Estimation of tumor heterogeneity using CGH array data’, BMC Bioinformatics, vol. 10, nr. 1, s. 12. Zieger, K, Wiuf, CH, Jensen, KM, Ørntoft, TF & Andersen, LD 2009, ‘Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer.’, BMC Cancer, vol. 9, s. 149. Review Preker, P, Nielsen, J, Schierup, MH & Jensen, TH 2009, ‘RNA polymerase plays both sides: Vivid and bidirectional transcription around and upstream of active promoters’, Cell Cycle, vol. 8, nr. 8, s. 1106- 1107. Videnskabelig bog/antologi Christiansen, F & Fenchel, T 2009, Evolution - Den forudsigelige vilkårlighed, Århus Universitetsforlag. Wiuf, CH & Andersen, CL (red.) 2009, Statistics and Informatics in Molecular Cancer Research, Oxford University Press. Bidrag til videnskabelig bog/antologi Wiuf, CH, Lamy, P & Andersen, CL 2009, ‘Methods for derivation of LOH and allelic copy numbers using SNP arrays’, I Wiuf, CH & Andersen, CL (red.), Statistics and Informatics in Molecular Cancer Research, Oxford University Press s. 62-77. Konferenceartikel peer-reviewed Justesen, P & Ursem, RK 2009, ‘Multiobjective Distinct Candidates Optimization (MODCO): A Cluster-Forming Differential Evolution Algorithm’, I Evolutionary Multi-Criterion Optimization: 5th International Conference, EMO 2009. Nantes, France, April 2009. Proceedings, Springer Verlag s. 525-539 (Lecture Notes in Computer Science (LNCS)). Knudsen, M & Nielsen, R 2009, ‘Modeling cis- and trans-regulation in Drosophila species’, I Tampere 34 Sundhedsvidenskabelig Forskning ved Aarhus Universitet og Århus Universitetshospital 2009
BIRC, BIOINFORMATICS RESEARCH CENTER International Center for Signal Processing, TICSP Series 48, Tampere International Center for Signal Processing. Kristensen, TG & Pedersen, CS 2009, ‘Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution’, I Proceedings of the 2009 International Joint conferences on Bioinformatics, System biology and Intelligent Computing (IJCBS2009), IEEE Computer Society s. 331-334. Kristensen, TG 2009, ‘Recombining Angles in Differential Evolution’, I IEEE Congress on Evolutionary Computation, CEC 2009, IEEE Press s. 3353 - 3356. Mailund, T, Nielsen, J & Pedersen, CS 2009, ‘A subcubic time algorithm for computing the quartet distance between two general trees’, I Proceedings of IJCBS 2009, IEEE Computer Society s. 565-568. Undervisning Lærebog Liljas, A, Liljas, L, Piskur, J, Lindblom, G, Nissen, P & Kjeldgaard, M 2009, Textbook on Structural Biology, 1 udg., Singapore University Press, Singapore. Wiuf, CH & Andersen, CL (red.) 2009, Statistics and Informatics in Molecular Cancer Research, 1 udg., Oxford University Press, Great Britain. Sundhedsvidenskabelig Forskning ved Aarhus Universitet og Århus Universitetshospital 2009 35
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