- Page 6:
Retrotransposons of rice as a tool
- Page 11 and 12:
First, the Rice Genetics Cooperativ
- Page 13 and 14:
OverviewRice genetics from Mendel t
- Page 15 and 16:
Rice genetics from Mendelto functio
- Page 17 and 18:
nese cultivar Nipponbare. The chrom
- Page 19:
Gene symbolization in riceIn the ab
- Page 26 and 27:
Table 2. Some examples of mapping g
- Page 28 and 29:
and YAC libraries, respectively. Th
- Page 30 and 31:
gene from wild species is the intro
- Page 32 and 33:
ReferencesAbbasi FM, Brar DS, Carpe
- Page 35 and 36:
Nagao S. 1951. Genic analysis and l
- Page 37:
Yoshimura S, Yamanouchi U, Katayose
- Page 40 and 41:
important traits for which segregat
- Page 42 and 43:
trolled by a single recessive gene,
- Page 44 and 45:
AromaAromatic rice varieties often
- Page 46 and 47:
Submergence tolerance is an interes
- Page 48 and 49:
Kinoshita T, Maekawa M. 1986. Genet
- Page 50 and 51:
NotesAuthors’ addresses: J.N. Rut
- Page 52 and 53:
The Rockefeller Foundation has a lo
- Page 54 and 55:
Evolution and implementation of the
- Page 56 and 57:
Scientific progress and outputsIn t
- Page 58 and 59:
Another salient example is that of
- Page 60 and 61:
BOX NO. 1recent international works
- Page 62 and 63:
For the purposes of this discussion
- Page 64 and 65:
Because of the great diversity (sci
- Page 66 and 67:
eeders where final products to enha
- Page 68 and 69:
Chen S, Lin XH, Xu CG, Zhang Q. 200
- Page 70 and 71:
Toenniessen GH. 1998. Rice biotechn
- Page 73 and 74:
Molecular markers,genetic diversity
- Page 75 and 76:
Evolution and domestication of rice
- Page 77 and 78:
ABCDO. barthiiO. rufipogonO. longis
- Page 79 and 80:
Wild(O. rufipogon)Geographical diff
- Page 81 and 82:
South Asia (particularly on the wes
- Page 83 and 84:
al 1992, Sun et al 1996a,b,c), thou
- Page 85 and 86:
wild and cultivated types (Est10, W
- Page 87 and 88:
Cai HW, Morishima H. 2000a. Diversi
- Page 89:
Sato YI, Tang SX, Yang LU, Tang LH.
- Page 92 and 93:
The solid base laid by classical ri
- Page 94 and 95:
The synthesis shown in Figure 1 is
- Page 96 and 97:
Arabidopsis, long heralded as a “
- Page 98 and 99:
Monocots and eudicots: Is there sti
- Page 100 and 101:
Zhang H, Jia J, Gale MD, Devos KM.
- Page 102 and 103:
ility of rice productivity (Lu 1999
- Page 104 and 105:
Table 1 continuedIntrageneric class
- Page 106 and 107:
Molecular markers and evolutionary
- Page 108 and 109:
A100100521010078100991009894100O. s
- Page 110 and 111:
Two distinct types of sequences wer
- Page 112 and 113:
arthii and O. longistaminata, and t
- Page 114 and 115:
testing Ka/Ks between the homeologo
- Page 116 and 117:
Roschevicz RI. 1931. A contribution
- Page 119 and 120:
Miniature inverted repeattransposab
- Page 121 and 122:
eau and Wessler 1992, 1994), rice (
- Page 123 and 124:
MITEs as a source of allelic divers
- Page 125 and 126:
ATIR Olo-D* Olo-CTIRBCas Exp Wan Sn
- Page 127 and 128:
Le QH, Wright S, Yu Z, Bureau T. 20
- Page 129 and 130:
Microsatellite markers in rice:abun
- Page 131 and 132:
make the best SSR markers for rice.
- Page 133 and 134:
Predicted frequency100,00080,000Cla
- Page 135 and 136:
Relationship between SSRs and genes
- Page 139 and 140:
are indicated with RM locus designa
- Page 141 and 142:
SSRs have been used to define intro
- Page 143 and 144:
provide a bridge for moving rapidly
- Page 145 and 146:
Ishii T, McCouch SR. 2000. Microsat
- Page 147:
NotesAuthors’ addresses: S.R. McC
- Page 150 and 151:
traits of economic importance (Mack
- Page 152 and 153:
Table 2. Tagging and mapping of som
- Page 154 and 155:
even at the juvenile stage. Several
- Page 156 and 157:
Chen et al (2000) transferred the b
- Page 158 and 159:
genome sequence of rice, this will
- Page 160 and 161:
Kurata N, Nagamura Y, Yamamoto K, H
- Page 162 and 163:
Witcombe JR, Hash CT. 2000. Resista
- Page 165 and 166:
QTL mapping in rice:a few critical
- Page 167 and 168:
M-QTLsM-QTLs are defined as single
- Page 169 and 170:
(genetic/statistical models and cor
- Page 171 and 172:
Table 5. The percentage of three ty
- Page 173 and 174:
Table 7. Some environment-specific
- Page 175 and 176:
ferently to the environments. Simil
- Page 177 and 178:
(case 3), one may infer that this g
- Page 179 and 180:
Simultaneous QTL introgression and
- Page 181 and 182:
Doebley J, Stec A, Gustus C. 1995.
- Page 183:
Visscher PM, Haley CS, Thompson R.
- Page 186 and 187:
unavailable until recently with the
- Page 188 and 189:
Table 1 continued.Trait QTL a Flank
- Page 190 and 191:
the remaining parts of the linkage
- Page 192 and 193:
Table 3. QTLs detected for yield an
- Page 194 and 195:
Table 6. Correlations of various pa
- Page 196 and 197:
The functions of these sequences ne
- Page 199 and 200:
Structural and functional genomicsT
- Page 201 and 202:
The International Rice GenomeSequen
- Page 203 and 204:
the RGP, a PAC (P1-derived artifici
- Page 205 and 206:
Progress of sequencing in the RGPWe
- Page 207 and 208:
ice genome sequencing to organize a
- Page 209 and 210:
Strategies and techniquesfor finish
- Page 211 and 212:
uses the quality values generated b
- Page 213 and 214:
with the advanced techniques requir
- Page 215 and 216:
times contain sufficient data to ma
- Page 217 and 218:
amplification of regions that previ
- Page 219 and 220:
4. Structure problems—subcloning
- Page 221 and 222:
estriction maps or optical maps are
- Page 223 and 224:
nal assembly may point to areas tha
- Page 225 and 226:
McMurray AA, Sulston JE, Quail MA.
- Page 227 and 228:
Sequence-tagged connector/DNA finge
- Page 229 and 230:
1999). The development of multiple-
- Page 231 and 232:
Transposable elements in the rice H
- Page 233 and 234:
ers, maps, mapping populations, and
- Page 235 and 236:
Miropeats-OSJNBa0065H03 1.2 cMThres
- Page 237:
NotesAuthors’ addresses: R.A. Win
- Page 240 and 241:
Sasaki 1997). Such analysis is ofte
- Page 242 and 243:
ABNipponbare × KasalathF 2QTL anal
- Page 244 and 245:
were classified into two groups bas
- Page 246 and 247:
effective at determining the genoty
- Page 248 and 249:
addition, some accessions of wild r
- Page 250 and 251:
Sasaki T, Burr T. 2000. Internation
- Page 252 and 253:
Mutational analysis has long been t
- Page 254 and 255:
marked by a deletion/chromosomal re
- Page 256 and 257:
analysis suggests that the mutation
- Page 258 and 259:
For drought-response screening, our
- Page 260 and 261:
Pi-7(t)Xa21Xa10Xa3Xa4Pi-1(t)Pi-k, P
- Page 262 and 263:
Although mutants with discrete gene
- Page 265 and 266:
Generation of T-DNA insertionaltagg
- Page 267 and 268:
Aprobe AEEprobe BpGA1633RBgus Tn p3
- Page 269 and 270:
Number of loci36%224%170%010 20 30F
- Page 271 and 272:
Table 2. GUS assay in roots of tran
- Page 273 and 274:
1999, Krysan et al 1999, Sato et al
- Page 275 and 276:
Transposons and functionalgenomics
- Page 277 and 278:
cesses. To study the interactions a
- Page 279 and 280:
Constructs were made with the aim o
- Page 281 and 282:
RBcis-effect of the adjacent strong
- Page 283 and 284:
Ac knockout mutagenesisThe Ac lines
- Page 285 and 286:
Table 2 summarizes the transformati
- Page 287 and 288:
ReferencesBaldwin D, Crane V, Rice
- Page 289:
NotesAuthors’ addresses: R. Greco
- Page 292 and 293:
These include T-DNA (Azpiroz-Leehan
- Page 294 and 295:
polyproteins and two identical 138-
- Page 296 and 297: mutant. The mutation in the ent-kau
- Page 298 and 299: primers (G1, G2) and two Tos17-spec
- Page 300 and 301: of insertion mutants by sequencing
- Page 302 and 303: Grandbastien M-A, Spielman A, Caboc
- Page 304 and 305: NotesAuthors’ addresses: H. Hiroc
- Page 306 and 307: human endeavor, greatly contributed
- Page 308 and 309: Equally important as the genomic in
- Page 310 and 311: Oryzabase is one of the most recent
- Page 312 and 313: Database structureA characteristic
- Page 314 and 315: types of users. An annotation datab
- Page 316 and 317: ReferencesAntonio BA, Fang Z, Sanch
- Page 319 and 320: Gene isolation and functionEnhancin
- Page 321 and 322: Enhancing deployment of genes forbl
- Page 323 and 324: mochi and Tsuyuake (Wu et al 1996).
- Page 325 and 326: tive indica rice varieties supports
- Page 327 and 328: transcription factor, resulting in
- Page 329 and 330: facilitate breeding durable resista
- Page 331 and 332: (Inukai et al 1994, Yu et al 1996,
- Page 333 and 334: Rossman AY, Howard RJ, Valent B. 19
- Page 335 and 336: Molecular signaling in diseaseresis
- Page 337 and 338: AOsRac1IED II III IV 214aaOsRac1 KC
- Page 339 and 340: Japonica rice variety Kinmaze, whic
- Page 341 and 342: Table 1. Characteristics of lesion-
- Page 343 and 344: an effective inducer of host resist
- Page 345: Takahashi A, Kawasaki T, Henmi K, S
- Page 349 and 350: trum, IRBB21 conferred a high level
- Page 351 and 352: elements. Two of them were located
- Page 353 and 354: IRBB2134532703506N20-247N18-116-1N1
- Page 355: Salmeron JM, Oldroyd GED, Rommens C
- Page 358 and 359: Understanding abiotic stress tolera
- Page 360 and 361: Table 1. Selected cDNA libraries fr
- Page 362 and 363: Table 2. Abundance profile of expre
- Page 364 and 365: Table 3 continued.Gene AbundancePut
- Page 366 and 367: duction of chips is done commercial
- Page 368 and 369: Microarray determination of salt st
- Page 370 and 371: ConclusionsThese analyses must be c
- Page 372 and 373: Table 5 continued.Open readingframe
- Page 374 and 375: Lin X, Kaul S, Rounsley S, Shea TP,
- Page 377 and 378: Molecular dissectionof cell death i
- Page 379 and 380: lysis appeared to be larger in diam
- Page 381 and 382: Cell divisionCell elongationand exp
- Page 383 and 384: extend to the S phase. Furthermore,
- Page 385 and 386: and, at 6 h, the population of S ph
- Page 387 and 388: Levine A, Tenhaken R, Dixon R, Lamb
- Page 389 and 390: Molecular tools for achievingsynthe
- Page 391 and 392: ANormal sexualpathwayMegasporangium
- Page 393 and 394: Tripsacum, a close relative of maiz
- Page 395 and 396: used T-DNA-tagging in Arabidopsis t
- Page 397 and 398:
aposporous apomicts such as H. aura
- Page 399 and 400:
Achieving synthetic apomixisThe min
- Page 401 and 402:
We isolated a rice homologue of the
- Page 403 and 404:
1996), and a putative hydroxyprolin
- Page 405 and 406:
The life cycle of angiosperms is pu
- Page 407 and 408:
Ablation of the sexual embryoIsolat
- Page 409 and 410:
Birchler JA. 1993. Dosage analysis
- Page 411 and 412:
Li JM, Yuan LP. 1999. Hybrid rice:
- Page 413:
Xu FX, Chye ML. 1999. Expression of
- Page 416 and 417:
404 Upadhyaya et al
- Page 418 and 419:
yield losses per annum of about US$
- Page 420 and 421:
Mutant replicase. With replicase ge
- Page 422 and 423:
Antiviral protein-mediated resistan
- Page 424 and 425:
ACRTSV (positive ssRNA)12,433 nt390
- Page 426 and 427:
Table 2. Summary of screening for r
- Page 428 and 429:
esistance obtained was delayed symp
- Page 430 and 431:
Finnegan J, McElroy D. 1994. Transg
- Page 432 and 433:
Stam M, de Bruin R, Kenter S, van d
- Page 435 and 436:
Transgenic approachesfor generating
- Page 437 and 438:
LEA proteins and their effect on st
- Page 439 and 440:
Table 1. Fresh and dry shoot weight
- Page 441 and 442:
Table 2. Growth performance of tran
- Page 443 and 444:
Table 3. The levels of green fluore
- Page 445 and 446:
(Zhang and Wu 1988). Plants were re
- Page 447 and 448:
expression levels in young root tip
- Page 449 and 450:
Kavi Kishor PB, Hong Z, Miao GH, Hu
- Page 451 and 452:
High-level expression ofC 4photosyn
- Page 453 and 454:
(Imaizumi et al 1997). However, the
- Page 455 and 456:
ously. Indeed, earlier attempts to
- Page 457 and 458:
(Hudspeth et al 1992). Not only inc
- Page 459:
Nomura M, Sentoku N, Nishimura A, L
- Page 462 and 463:
fects. Recent data suggest, however
- Page 464 and 465:
AH H H H H HEEEEEEBBBE H B UFig. 1.
- Page 466 and 467:
transcription through one transgene
- Page 468 and 469:
sertion of an adventitious DNA frag
- Page 470 and 471:
tin is folded into loops may result
- Page 472 and 473:
Whole-plasmid DNAClean fragmentBomb
- Page 474 and 475:
Concluding commentsExperiments invo
- Page 476 and 477:
Tinland B. 1996. The integration of
- Page 478 and 479:
immune systems. Thus, restriction e
- Page 480 and 481:
A: p35S-CryIIIA 35SBtt CryIIIA nosB
- Page 482 and 483:
appealing in regard to our efforts
- Page 484 and 485:
1998, Kumpatla and Hall 1999). The
- Page 486 and 487:
HindIIIHindIIIRB 35S hpt 35S 35S in
- Page 488 and 489:
ments (Francastel et al 1999), are
- Page 490 and 491:
ReferencesAmedeo P, Habu Y, Afsar K
- Page 492 and 493:
Matzke MA, Neuhuber F, Matzke AJ. 1
- Page 495 and 496:
Workshop reports483
- Page 497 and 498:
Functional genomics workshopThe obj
- Page 499 and 500:
Bioinformatics workshopThe Bioinfor